Literature DB >> 22904835

(Z)-3-(2-Hy-droxy-eth-yl)-2-(phenyl-imino)-1,3-thia-zolidin-4-one.

Shaaban K Mohamed, Antar A Abdelhamid, Sabry H H Younes, Mahmoud A A Elremaily, Jim Simpson.   

Abstract

In the title compound, C(11)H(12)N(2)O(2)S, the thia-zole and phenyl rings are inclined at 56.99 (6)° to one another. The thia-zole ring is planar with an r.m.s. deviation for the five ring atoms of 0.0274 Å. The presence of the phenyl-imine substituent is confirmed with the C=N distance to the thia-zole ring of 1.2638 (19) Å. The mol-ecule adopts a Z conformation with respect to this bond. The -OH group of the hy-droxy-ethyl substituent is disordered over two positions with relative occupancies 0.517 (4) and 0.483 (4). In the crystal, O-H⋯O hydrogen bonds, augmented by C-H⋯N contacts, form dimers with R(2) (2)(11) rings and generate chains along the b axis. Parallel chains are linked in an obverse fashion by weak C-H⋯S hydrogen bonds. C-H⋯O hydrogen bonds together with C-H⋯π contacts further consolidate the structure, stacking mol-ecules along the b axis.

Entities:  

Year:  2012        PMID: 22904835      PMCID: PMC3414302          DOI: 10.1107/S1600536812030243

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical background to thia­zolidinone compounds, see: Shah & Desai (2007 ▶); Subudhi et al. (2007 ▶); Kuecuekguezel et al. (2006 ▶); Mehta et al. (2006 ▶); Srivastava et al. (2006 ▶); Zhou et al. (2008 ▶). For our recent work on the synthesis of bio-selective mol­ecules, see: Mohamed et al. (2012 ▶). For related structures, see: Bally & Mornon (1973 ▶); Moghaddam & Hojabri (2007 ▶); Yella et al. (2008 ▶); Abdel-Aziz et al. (2012 ▶). For standard bond distances, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H12N2O2S M = 236.29 Monoclinic, a = 11.9612 (6) Å b = 6.9478 (3) Å c = 13.1554 (6) Å β = 91.244 (2)° V = 1093.01 (9) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 91 K 0.40 × 0.26 × 0.11 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2011 ▶) T min = 0.693, T max = 0.746 17811 measured reflections 2547 independent reflections 2150 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.100 S = 1.08 2547 reflections 157 parameters 6 restraints H-atom parameters constrained Δρmax = 0.79 e Å−3 Δρmin = −0.68 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: APEX2 and SAINT (Bruker, 2011 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶) and TITAN (Hunter & Simpson, 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and TITAN; molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812030243/tk5126sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030243/tk5126Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812030243/tk5126Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O2SF(000) = 496
Mr = 236.29Dx = 1.436 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5327 reflections
a = 11.9612 (6) Åθ = 3.3–27.6°
b = 6.9478 (3) ŵ = 0.28 mm1
c = 13.1554 (6) ÅT = 91 K
β = 91.244 (2)°Irregular block, yellow
V = 1093.01 (9) Å30.40 × 0.26 × 0.11 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2547 independent reflections
Radiation source: fine-focus sealed tube2150 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
φ and ω scansθmax = 27.7°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2011)h = −15→15
Tmin = 0.693, Tmax = 0.746k = −9→9
17811 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0373P)2 + 0.9645P] where P = (Fo2 + 2Fc2)/3
2547 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.79 e Å3
6 restraintsΔρmin = −0.68 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.27696 (4)0.19764 (7)0.90742 (4)0.02132 (14)
C10.18673 (18)0.0254 (3)0.96766 (16)0.0261 (4)
H1A0.1232−0.00830.92160.031*
H1B0.2287−0.09370.98430.031*
C20.14480 (17)0.1172 (3)1.06312 (15)0.0248 (4)
O10.08555 (15)0.0341 (2)1.12382 (12)0.0393 (4)
N10.17971 (13)0.3030 (2)1.07448 (12)0.0204 (3)
C40.24668 (14)0.3775 (3)0.99792 (13)0.0172 (4)
N50.28128 (12)0.5494 (2)1.00068 (11)0.0180 (3)
C60.34388 (14)0.6235 (3)0.91831 (14)0.0171 (4)
C70.29991 (15)0.6270 (3)0.81901 (14)0.0196 (4)
H70.22980.56820.80390.023*
C80.35896 (16)0.7167 (3)0.74242 (15)0.0213 (4)
H80.32920.71790.67490.026*
C90.46134 (17)0.8049 (3)0.76381 (15)0.0234 (4)
H90.50140.86610.71130.028*
C100.50430 (16)0.8025 (3)0.86274 (15)0.0233 (4)
H100.57420.86230.87770.028*
C110.44593 (15)0.7135 (3)0.94010 (14)0.0201 (4)
H110.47550.71391.00770.024*
C120.14901 (17)0.4171 (3)1.16360 (15)0.0255 (4)
H12A0.21130.50571.18120.031*
H12B0.13930.32921.22200.031*
C130.0447 (2)0.5319 (4)1.14846 (19)0.0439 (6)
H13A−0.01670.43641.14690.053*
H13B0.03630.60541.21230.053*
O20.0188 (2)0.6593 (4)1.0724 (2)0.0241 (8)0.517 (4)
H20.04830.76631.08560.036*0.517 (4)
O3−0.0418 (2)0.4527 (5)1.1267 (2)0.0316 (9)0.483 (4)
H3−0.04090.41681.06580.047*0.483 (4)
U11U22U33U12U13U23
S10.0221 (2)0.0226 (3)0.0195 (2)0.00206 (18)0.00538 (17)−0.00315 (18)
C10.0326 (10)0.0206 (10)0.0254 (10)−0.0003 (8)0.0066 (8)−0.0018 (8)
C20.0280 (10)0.0244 (10)0.0221 (10)−0.0040 (8)0.0038 (8)−0.0013 (8)
O10.0548 (10)0.0346 (9)0.0292 (8)−0.0195 (8)0.0170 (7)−0.0056 (7)
N10.0211 (8)0.0236 (8)0.0166 (8)−0.0037 (6)0.0043 (6)−0.0034 (6)
C40.0140 (8)0.0230 (9)0.0146 (8)0.0029 (7)−0.0001 (6)−0.0010 (7)
N50.0161 (7)0.0229 (8)0.0150 (7)0.0014 (6)0.0010 (6)−0.0006 (6)
C60.0181 (8)0.0163 (8)0.0170 (9)0.0037 (7)0.0029 (7)−0.0007 (7)
C70.0197 (8)0.0203 (9)0.0187 (9)0.0040 (7)0.0008 (7)−0.0016 (7)
C80.0280 (9)0.0186 (9)0.0172 (9)0.0058 (7)0.0014 (7)0.0014 (7)
C90.0302 (10)0.0182 (9)0.0220 (10)0.0017 (8)0.0066 (8)0.0043 (8)
C100.0221 (9)0.0205 (9)0.0272 (10)−0.0028 (7)0.0018 (8)0.0020 (8)
C110.0223 (9)0.0191 (9)0.0187 (9)0.0009 (7)−0.0014 (7)0.0013 (7)
C120.0322 (10)0.0290 (10)0.0157 (9)−0.0098 (8)0.0084 (8)−0.0067 (8)
C130.0564 (10)0.0410 (10)0.0346 (9)0.0164 (8)0.0045 (8)−0.0037 (8)
O20.0295 (15)0.0209 (14)0.0217 (15)−0.0021 (11)−0.0001 (11)−0.0017 (11)
O30.0208 (15)0.054 (2)0.0197 (16)0.0020 (14)0.0030 (11)−0.0044 (15)
S1—C41.7689 (19)C8—H80.9500
S1—C11.806 (2)C9—C101.389 (3)
C1—C21.504 (3)C9—H90.9500
C1—H1A0.9900C10—C111.392 (3)
C1—H1B0.9900C10—H100.9500
C2—O11.224 (2)C11—H110.9500
C2—N11.364 (3)C12—C131.490 (3)
N1—C41.400 (2)C12—H12A0.9900
N1—C121.469 (2)C12—H12B0.9900
C4—N51.264 (2)C13—O31.202 (4)
N5—C61.427 (2)C13—O21.367 (4)
C6—C111.396 (3)C13—H13A0.9900
C6—C71.398 (3)C13—H13B0.9900
C7—C81.391 (3)O2—H20.8400
C7—H70.9500O3—H30.8400
C8—C91.393 (3)
C4—S1—C192.29 (9)C10—C9—C8119.34 (18)
C2—C1—S1107.38 (14)C10—C9—H9120.3
C2—C1—H1A110.2C8—C9—H9120.3
S1—C1—H1A110.2C9—C10—C11120.61 (18)
C2—C1—H1B110.2C9—C10—H10119.7
S1—C1—H1B110.2C11—C10—H10119.7
H1A—C1—H1B108.5C10—C11—C6119.96 (17)
O1—C2—N1123.72 (18)C10—C11—H11120.0
O1—C2—C1123.58 (19)C6—C11—H11120.0
N1—C2—C1112.69 (17)N1—C12—C13113.91 (18)
C2—N1—C4116.73 (16)N1—C12—H12A108.8
C2—N1—C12121.13 (16)C13—C12—H12A108.8
C4—N1—C12122.13 (16)N1—C12—H12B108.8
N5—C4—N1121.38 (16)C13—C12—H12B108.8
N5—C4—S1127.96 (14)H12A—C12—H12B107.7
N1—C4—S1110.59 (13)O3—C13—O286.7 (3)
C4—N5—C6119.74 (16)O3—C13—C12120.0 (3)
C11—C6—C7119.60 (17)O2—C13—C12128.4 (2)
C11—C6—N5118.48 (16)O2—C13—H13A105.2
C7—C6—N5121.54 (16)C12—C13—H13A105.2
C8—C7—C6119.88 (17)O3—C13—H13B109.6
C8—C7—H7120.1O2—C13—H13B105.2
C6—C7—H7120.1C12—C13—H13B105.2
C7—C8—C9120.61 (18)H13A—C13—H13B105.9
C7—C8—H8119.7C13—O2—H2109.5
C9—C8—H8119.7C13—O3—H3109.5
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.841.982.802 (3)168
C13—H13B···O1ii0.992.673.407 (3)131
C1—H1A···O1iii0.992.563.472 (3)153
C12—H12B···S1iv0.992.923.613 (2)128
C1—H1B···N5v0.992.573.519 (3)162
C9—H9···Cg2vi0.952.773.5731 (16)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C6–C11 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O1i 0.841.982.802 (3)168
C13—H13B⋯O1ii 0.992.673.407 (3)131
C1—H1A⋯O1iii 0.992.563.472 (3)153
C12—H12B⋯S1iv 0.992.923.613 (2)128
C1—H1B⋯N5v 0.992.573.519 (3)162
C9—H9⋯Cg2vi 0.952.773.5731 (16)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  6 in total

1.  Design, synthesis, cytoselective toxicity, structure-activity relationships, and pharmacophore of thiazolidinone derivatives targeting drug-resistant lung cancer cells.

Authors:  Hongyu Zhou; Shuhong Wu; Shumei Zhai; Aifeng Liu; Ying Sun; Rongshi Li; Ying Zhang; Sean Ekins; Peter W Swaan; Bingliang Fang; Bin Zhang; Bing Yan
Journal:  J Med Chem       Date:  2008-02-08       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and biological activity of 4-thiazolidinones, thiosemicarbazides derived from diflunisal hydrazide.

Authors:  Güniz Küçükgüzel; Ayla Kocatepe; Erik De Clercq; Fikrettin Sahin; Medine Güllüce
Journal:  Eur J Med Chem       Date:  2006-01-18       Impact factor: 6.514

4.  2-Anilino-3-(2-hy-droxy-prop-yl)-4-methyl-1,3-thia-zol-3-ium chloride.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Muhammad N Tahir; Antar A Abdelhamid; Ali N Khalilov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

5.  (Z)-3-p-Tolyl-2-(p-tolyl-imino)-1,3-thia-zolidin-4-one.

Authors:  Hatem A Abdel-Aziz; Hazem A Ghabbour; Tze Shyang Chia; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-24

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.