Literature DB >> 22904831

4-(4,5-Dihydro-1H-benzo[g]indazol-3-yl)pyridinium chloride dihydrate.

Luan-Fang Yang1, Hong-Bo Hou, Yi-Ming Liu.   

Abstract

In the cation of the title compound, C(16)H(14)N(3) (+)·Cl(-)·2H(2)O, the cyclo-hexa-1,3-diene ring displays a screw-boat conformation and the pyridine ring is slightly twisted with respect to the pyrazole ring with a dihedral angle of 4.56 (12)°. In the crystal, ions and water mol-ecules are linked into a three-dimensional network by classical N-H⋯O, N-H⋯Cl, O-H⋯Cl and O-H⋯O hydrogen bonds and by π-π stacking inter-actions, with centroid-centroid distances of 3.7580 (14) and 3.7794 (14) Å.

Entities:  

Year:  2012        PMID: 22904831      PMCID: PMC3414298          DOI: 10.1107/S160053681203019X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmacological properties of indazole derivatives, see: Bistochi et al. (1981 ▶); Keppler & Hartmann (1994 ▶); Gomtsyan et al. (2008 ▶).

Experimental

Crystal data

C16H14N3Cl−·2H2O M = 319.78 Triclinic, a = 6.7977 (5) Å b = 9.4406 (7) Å c = 12.2691 (9) Å α = 93.846 (3)° β = 96.883 (3)° γ = 93.490 (3)° V = 778.04 (10) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 293 K 0.22 × 0.19 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer 8076 measured reflections 2710 independent reflections 2185 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.119 S = 1.06 2710 reflections 199 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681203019X/rz2781sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203019X/rz2781Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203019X/rz2781Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N3+·Cl·2H2OZ = 2
Mr = 319.78F(000) = 336
Triclinic, P1Dx = 1.365 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7977 (5) ÅCell parameters from 2710 reflections
b = 9.4406 (7) Åθ = 1.7–25.0°
c = 12.2691 (9) ŵ = 0.26 mm1
α = 93.846 (3)°T = 293 K
β = 96.883 (3)°Block, colourless
γ = 93.490 (3)°0.22 × 0.19 × 0.18 mm
V = 778.04 (10) Å3
Bruker SMART CCD area-detector diffractometer2185 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
Graphite monochromatorθmax = 25.0°, θmin = 1.7°
φ and ω scansh = −8→7
8076 measured reflectionsk = −10→11
2710 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0498P)2 + 0.5403P] where P = (Fo2 + 2Fc2)/3
2710 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3584 (4)0.6698 (3)0.8547 (2)0.0387 (6)
H10.36800.63020.92240.046*
C20.3132 (4)0.5827 (3)0.75906 (19)0.0339 (6)
H20.29030.48500.76220.041*
C30.3018 (3)0.6421 (2)0.65730 (17)0.0247 (5)
C40.3295 (3)0.7899 (2)0.65869 (18)0.0286 (5)
H40.31810.83310.59250.034*
C50.3731 (3)0.8721 (3)0.75539 (19)0.0318 (5)
H50.39210.97050.75510.038*
C60.2672 (3)0.5559 (2)0.55224 (17)0.0230 (5)
C70.2449 (3)0.4070 (2)0.52895 (17)0.0240 (5)
C80.2336 (4)0.2806 (2)0.5973 (2)0.0322 (6)
H8A0.10140.26830.61900.039*
H8B0.32740.29780.66360.039*
C90.2217 (3)0.3888 (2)0.41550 (18)0.0240 (5)
C100.2804 (4)0.1448 (3)0.5328 (2)0.0364 (6)
H10A0.42340.13910.54180.044*
H10B0.22370.06380.56590.044*
C110.2075 (3)0.1303 (2)0.4108 (2)0.0312 (5)
C120.1880 (3)0.2522 (2)0.35072 (19)0.0271 (5)
C130.1380 (3)0.2384 (3)0.2367 (2)0.0315 (5)
H130.12580.31900.19750.038*
C140.1064 (4)0.1042 (3)0.1821 (2)0.0403 (6)
H140.07430.09490.10600.048*
C150.1224 (4)−0.0156 (3)0.2399 (2)0.0437 (7)
H150.0997−0.10540.20280.052*
C160.1723 (4)−0.0027 (3)0.3532 (2)0.0395 (6)
H160.1824−0.08430.39140.047*
N10.3885 (3)0.8098 (2)0.85102 (16)0.0349 (5)
H1N0.41870.86190.91160.042*
N20.2606 (3)0.62466 (19)0.45875 (14)0.0249 (4)
N30.2321 (3)0.52067 (19)0.37761 (14)0.0248 (4)
H30.22140.53570.30890.030*
O1W0.8185 (3)0.6654 (3)0.04112 (19)0.0691 (7)
H1WA0.94130.64350.06470.083*
H1WB0.79640.5906−0.00500.083*
O2W0.5429 (3)0.85870 (19)0.07832 (14)0.0399 (5)
H2WA0.48370.78980.11180.048*
H2WB0.65320.80850.07320.048*
Cl10.25495 (10)0.60918 (7)0.13519 (5)0.0441 (2)
U11U22U33U12U13U23
C10.0428 (15)0.0472 (17)0.0268 (12)0.0083 (12)0.0023 (10)0.0076 (11)
C20.0393 (14)0.0321 (14)0.0313 (12)0.0048 (11)0.0043 (10)0.0078 (11)
C30.0193 (11)0.0282 (13)0.0277 (11)0.0045 (9)0.0045 (8)0.0048 (9)
C40.0290 (12)0.0281 (13)0.0299 (12)0.0040 (10)0.0061 (9)0.0043 (10)
C50.0298 (13)0.0295 (13)0.0362 (13)0.0028 (10)0.0062 (10)−0.0008 (11)
C60.0206 (11)0.0237 (12)0.0259 (11)0.0022 (9)0.0043 (8)0.0069 (9)
C70.0185 (11)0.0239 (12)0.0308 (11)0.0033 (9)0.0044 (9)0.0057 (9)
C80.0338 (13)0.0265 (13)0.0383 (13)0.0043 (10)0.0067 (10)0.0114 (11)
C90.0202 (11)0.0216 (12)0.0314 (12)0.0028 (9)0.0053 (9)0.0062 (9)
C100.0356 (14)0.0262 (14)0.0503 (15)0.0063 (10)0.0094 (11)0.0122 (12)
C110.0221 (12)0.0234 (13)0.0496 (14)0.0024 (9)0.0100 (10)0.0042 (11)
C120.0200 (11)0.0247 (13)0.0372 (12)0.0011 (9)0.0080 (9)0.0001 (10)
C130.0238 (12)0.0305 (14)0.0412 (13)0.0021 (10)0.0088 (10)0.0005 (11)
C140.0342 (14)0.0385 (16)0.0463 (15)−0.0001 (11)0.0064 (11)−0.0101 (13)
C150.0367 (15)0.0264 (14)0.0659 (18)−0.0017 (11)0.0103 (13)−0.0144 (13)
C160.0321 (14)0.0236 (13)0.0637 (18)0.0008 (10)0.0104 (12)0.0032 (12)
N10.0318 (11)0.0424 (14)0.0292 (10)0.0034 (9)0.0020 (8)−0.0063 (9)
N20.0266 (10)0.0214 (10)0.0270 (9)0.0023 (8)0.0035 (7)0.0033 (8)
N30.0286 (10)0.0227 (10)0.0232 (9)0.0024 (8)0.0030 (7)0.0021 (8)
O1W0.0588 (14)0.0699 (16)0.0761 (15)0.0245 (12)−0.0030 (11)−0.0103 (12)
O2W0.0382 (10)0.0376 (11)0.0409 (10)0.0052 (8)0.0003 (8)−0.0142 (8)
Cl10.0570 (4)0.0417 (4)0.0343 (3)0.0068 (3)0.0048 (3)0.0064 (3)
C1—N11.330 (3)C10—C111.514 (4)
C1—C21.378 (3)C10—H10A0.9700
C1—H10.9300C10—H10B0.9700
C2—C31.398 (3)C11—C161.392 (3)
C2—H20.9300C11—C121.413 (3)
C3—C41.395 (3)C12—C131.395 (3)
C3—C61.464 (3)C13—C141.385 (3)
C4—C51.365 (3)C13—H130.9300
C4—H40.9300C14—C151.378 (4)
C5—N11.344 (3)C14—H140.9300
C5—H50.9300C15—C161.386 (4)
C6—N21.353 (3)C15—H150.9300
C6—C71.411 (3)C16—H160.9300
C7—C91.380 (3)N1—H1N0.8600
C7—C81.507 (3)N2—N31.339 (2)
C8—C101.532 (3)N3—H30.8600
C8—H8A0.9700O1W—H1WA0.8917
C8—H8B0.9700O1W—H1WB0.8693
C9—N31.359 (3)O2W—H2WA0.8928
C9—C121.459 (3)O2W—H2WB0.9171
N1—C1—C2120.6 (2)C8—C10—H10A108.1
N1—C1—H1119.7C11—C10—H10B108.1
C2—C1—H1119.7C8—C10—H10B108.1
C1—C2—C3119.6 (2)H10A—C10—H10B107.3
C1—C2—H2120.2C16—C11—C12118.1 (2)
C3—C2—H2120.2C16—C11—C10121.2 (2)
C4—C3—C2117.2 (2)C12—C11—C10120.5 (2)
C4—C3—C6120.0 (2)C13—C12—C11120.4 (2)
C2—C3—C6122.8 (2)C13—C12—C9123.8 (2)
C5—C4—C3121.2 (2)C11—C12—C9115.8 (2)
C5—C4—H4119.4C14—C13—C12119.8 (2)
C3—C4—H4119.4C14—C13—H13120.1
N1—C5—C4119.4 (2)C12—C13—H13120.1
N1—C5—H5120.3C15—C14—C13120.4 (3)
C4—C5—H5120.3C15—C14—H14119.8
N2—C6—C7111.32 (19)C13—C14—H14119.8
N2—C6—C3117.73 (19)C14—C15—C16120.2 (2)
C7—C6—C3130.9 (2)C14—C15—H15119.9
C9—C7—C6104.38 (19)C16—C15—H15119.9
C9—C7—C8120.7 (2)C15—C16—C11121.1 (2)
C6—C7—C8134.9 (2)C15—C16—H16119.4
C7—C8—C10111.05 (19)C11—C16—H16119.4
C7—C8—H8A109.4C1—N1—C5121.9 (2)
C10—C8—H8A109.4C1—N1—H1N119.0
C7—C8—H8B109.4C5—N1—H1N119.0
C10—C8—H8B109.4N3—N2—C6104.52 (17)
H8A—C8—H8B108.0N2—N3—C9112.78 (17)
N3—C9—C7106.99 (19)N2—N3—H3123.6
N3—C9—C12127.6 (2)C9—N3—H3123.6
C7—C9—C12125.4 (2)H1WA—O1W—H1WB93.0
C11—C10—C8116.6 (2)H2WA—O2W—H2WB92.1
C11—C10—H10A108.1
N1—C1—C2—C31.0 (4)C16—C11—C12—C13−1.0 (3)
C1—C2—C3—C4−2.6 (3)C10—C11—C12—C13174.2 (2)
C1—C2—C3—C6176.0 (2)C16—C11—C12—C9178.5 (2)
C2—C3—C4—C52.4 (3)C10—C11—C12—C9−6.2 (3)
C6—C3—C4—C5−176.3 (2)N3—C9—C12—C13−7.7 (4)
C3—C4—C5—N1−0.4 (3)C7—C9—C12—C13170.8 (2)
C4—C3—C6—N2−0.9 (3)N3—C9—C12—C11172.8 (2)
C2—C3—C6—N2−179.5 (2)C7—C9—C12—C11−8.8 (3)
C4—C3—C6—C7176.5 (2)C11—C12—C13—C140.3 (3)
C2—C3—C6—C7−2.0 (4)C9—C12—C13—C14−179.2 (2)
N2—C6—C7—C9−0.7 (2)C12—C13—C14—C150.6 (4)
C3—C6—C7—C9−178.3 (2)C13—C14—C15—C16−0.7 (4)
N2—C6—C7—C8−177.6 (2)C14—C15—C16—C11−0.1 (4)
C3—C6—C7—C84.8 (4)C12—C11—C16—C150.9 (3)
C9—C7—C8—C1023.2 (3)C10—C11—C16—C15−174.3 (2)
C6—C7—C8—C10−160.4 (2)C2—C1—N1—C51.1 (4)
C6—C7—C9—N30.4 (2)C4—C5—N1—C1−1.4 (3)
C8—C7—C9—N3177.81 (19)C7—C6—N2—N30.7 (2)
C6—C7—C9—C12−178.3 (2)C3—C6—N2—N3178.68 (17)
C8—C7—C9—C12−0.9 (3)C6—N2—N3—C9−0.5 (2)
C7—C8—C10—C11−36.3 (3)C7—C9—N3—N20.0 (2)
C8—C10—C11—C16−155.3 (2)C12—C9—N3—N2178.70 (19)
C8—C10—C11—C1229.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2Wi0.862.122.856 (2)143
N3—H3···Cl10.862.323.1618 (19)167
O1W—H1WA···Cl1ii0.892.253.142 (2)174
O1W—H1WB···Cl1iii0.872.373.237 (3)178
O2W—H2WA···Cl10.892.293.139 (2)158
O2W—H2WB···O1W0.921.862.749 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O2W i 0.862.122.856 (2)143
N3—H3⋯Cl10.862.323.1618 (19)167
O1W—H1WA⋯Cl1ii 0.892.253.142 (2)174
O1W—H1WB⋯Cl1iii 0.872.373.237 (3)178
O2W—H2WA⋯Cl10.892.293.139 (2)158
O2W—H2WB⋯O1W 0.921.862.749 (3)162

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [N1-substituted 1H-indazole-3-ethyl carboxylates and 1H-indazole-3-hydroxamic acids].

Authors:  G A Bistocchi; G De Meo; M Pedini; A Ricci; H Brouilhet; S Boucherie; M Rabaud; P Jacquignon
Journal:  Farmaco Sci       Date:  1981-05

3.  New tumor-inhibiting metal complexes. Chemistry and antitumor properties.

Authors:  B K Keppler; M Hartmann
Journal:  Met Based Drugs       Date:  1994
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.