Literature DB >> 22904821

Redetermination of tetra-methyl tetra-thia-fulvalene-2,3,6,7-tetra-carboxyl-ate.

Felix Katzsch1, Edwin Weber.   

Abstract

An improved crystal structure of the title compound, C(14)H(12)O(8)S(4), is reported. The structure, previously solved using the heavy-atom method (R = 7.1%), has now been solved using direct methods. Due to the improved quality of the data set an R value of 2.06% could be achieved. In the crystal, C-H⋯S and C-H⋯O contacts link the mol-ecules.

Entities:  

Year:  2012        PMID: 22904821      PMCID: PMC3414288          DOI: 10.1107/S1600536812029534

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the first structure determination of the title compound, see: Belsky & Voet (1976 ▶). For a previously reported experimental procedure and physical data, see: Yoneda et al. (1978 ▶). For C—H⋯O hydrogen bonds, see: Desiraju & Steiner (1999 ▶); Katzsch et al. (2011 ▶); Fischer et al. (2011 ▶). For C—H⋯S hydrogen bonds, see: Mata et al. (2010 ▶); Novoa et al. (1995 ▶); Lu et al. (2005 ▶); Saad et al. (2010 ▶). For a description of ring motifs, see: Bernstein et al. (1995 ▶); Petersen et al. (2007 ▶). For several steps of the synthetic procedure, see: Degani et al. (1986 ▶); O’Connor & Jones (1970 ▶); Nguyen et al. (2010 ▶). For general background to the electroconductive behaviour of tetra­thia­fulvalene derivatives, see: Takase et al. (2011 ▶).

Experimental

Crystal data

C14H12O8S4 M = 436.48 Triclinic, a = 6.8666 (2) Å b = 7.8783 (2) Å c = 8.4335 (2) Å α = 100.221 (1)° β = 99.255 (1)° γ = 99.328 (1)° V = 434.53 (2) Å3 Z = 1 Mo Kα radiation μ = 0.59 mm−1 T = 100 K 0.64 × 0.16 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.705, T max = 0.917 10884 measured reflections 1534 independent reflections 1471 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.055 S = 1.08 1534 reflections 120 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029534/im2387sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029534/im2387Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029534/im2387Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12O8S4Z = 1
Mr = 436.48F(000) = 224
Triclinic, P1Dx = 1.668 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.8666 (2) ÅCell parameters from 9962 reflections
b = 7.8783 (2) Åθ = 2.5–45.3°
c = 8.4335 (2) ŵ = 0.59 mm1
α = 100.221 (1)°T = 100 K
β = 99.255 (1)°Needle, red
γ = 99.328 (1)°0.64 × 0.16 × 0.15 mm
V = 434.53 (2) Å3
Bruker APEXII CCD area-detector diffractometer1534 independent reflections
Radiation source: fine-focus sealed tube1471 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
phi and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −7→8
Tmin = 0.705, Tmax = 0.917k = −9→9
10884 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.055H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0273P)2 + 0.222P] where P = (Fo2 + 2Fc2)/3
1534 reflections(Δ/σ)max = 0.026
120 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.30978 (5)0.63798 (4)1.10656 (4)0.01479 (11)
S20.06589 (5)0.56717 (4)0.76932 (4)0.01637 (11)
O10.69629 (14)0.93615 (13)0.94082 (12)0.0194 (2)
O20.72198 (13)0.79160 (12)1.14884 (11)0.0167 (2)
O30.27914 (16)0.78034 (15)0.55357 (13)0.0265 (3)
O40.56544 (14)0.69314 (13)0.64417 (11)0.0181 (2)
C10.0779 (2)0.54255 (17)0.97428 (16)0.0140 (3)
C20.4249 (2)0.71176 (17)0.95464 (16)0.0131 (3)
C30.31610 (19)0.67605 (17)0.80137 (16)0.0138 (3)
C40.62881 (19)0.82552 (17)1.00955 (16)0.0138 (3)
C50.9200 (2)0.90095 (19)1.21844 (18)0.0196 (3)
H5A1.00060.89961.13530.029*
H5B0.98400.85601.30750.029*
H5C0.90611.01941.25840.029*
C60.3832 (2)0.72501 (17)0.65299 (16)0.0153 (3)
C70.6552 (2)0.7573 (2)0.51653 (17)0.0226 (3)
H7A0.57900.69460.41080.034*
H7B0.79110.73910.52700.034*
H7C0.65480.88050.52720.034*
U11U22U33U12U13U23
S10.01005 (18)0.02032 (19)0.01379 (18)−0.00123 (13)0.00238 (12)0.00683 (13)
S20.01129 (18)0.02217 (19)0.01518 (18)−0.00117 (13)0.00129 (13)0.00788 (13)
O10.0162 (5)0.0197 (5)0.0233 (5)−0.0007 (4)0.0067 (4)0.0087 (4)
O20.0108 (5)0.0206 (5)0.0168 (5)−0.0020 (4)0.0011 (4)0.0055 (4)
O30.0216 (6)0.0423 (7)0.0225 (5)0.0111 (5)0.0064 (4)0.0184 (5)
O40.0158 (5)0.0265 (5)0.0161 (5)0.0054 (4)0.0076 (4)0.0096 (4)
C10.0116 (6)0.0158 (6)0.0147 (6)0.0017 (5)0.0017 (5)0.0049 (5)
C20.0127 (6)0.0131 (6)0.0160 (6)0.0035 (5)0.0064 (5)0.0053 (5)
C30.0109 (6)0.0133 (6)0.0184 (7)0.0019 (5)0.0046 (5)0.0050 (5)
C40.0126 (6)0.0143 (6)0.0157 (6)0.0035 (5)0.0062 (5)0.0022 (5)
C50.0104 (7)0.0216 (7)0.0231 (7)−0.0023 (5)0.0002 (5)0.0024 (6)
C60.0154 (7)0.0147 (6)0.0152 (7)0.0009 (5)0.0032 (5)0.0032 (5)
C70.0188 (7)0.0342 (8)0.0176 (7)0.0022 (6)0.0087 (6)0.0110 (6)
S1—C21.7452 (13)C1—C1i1.343 (3)
S1—C11.7570 (13)C2—C31.3419 (19)
S2—C31.7468 (13)C2—C41.4882 (18)
S2—C11.7636 (13)C3—C61.4921 (18)
O1—C41.2022 (16)C5—H5A0.9600
O2—C41.3363 (16)C5—H5B0.9600
O2—C51.4559 (16)C5—H5C0.9600
O3—C61.2007 (17)C7—H7A0.9600
O4—C61.3263 (16)C7—H7B0.9600
O4—C71.4487 (16)C7—H7C0.9600
C2—S1—C194.90 (6)O2—C5—H5A109.5
C3—S2—C194.65 (6)O2—C5—H5B109.5
C4—O2—C5115.25 (10)H5A—C5—H5B109.5
C6—O4—C7115.57 (11)O2—C5—H5C109.5
C1i—C1—S1122.42 (14)H5A—C5—H5C109.5
C1i—C1—S2122.68 (14)H5B—C5—H5C109.5
S1—C1—S2114.90 (7)O3—C6—O4125.74 (12)
C3—C2—C4125.13 (12)O3—C6—C3122.87 (12)
C3—C2—S1117.68 (10)O4—C6—C3111.34 (11)
C4—C2—S1116.86 (10)O4—C7—H7A109.5
C2—C3—C6126.96 (12)O4—C7—H7B109.5
C2—C3—S2117.78 (10)H7A—C7—H7B109.5
C6—C3—S2115.23 (10)O4—C7—H7C109.5
O1—C4—O2125.14 (12)H7A—C7—H7C109.5
O1—C4—C2124.48 (12)H7B—C7—H7C109.5
O2—C4—C2110.33 (11)
C2—S1—C1—C1i178.58 (16)C5—O2—C4—O10.21 (18)
C2—S1—C1—S2−1.44 (8)C5—O2—C4—C2−177.38 (10)
C3—S2—C1—C1i−177.53 (16)C3—C2—C4—O122.1 (2)
C3—S2—C1—S12.49 (8)S1—C2—C4—O1−151.10 (11)
C1—S1—C2—C3−0.67 (11)C3—C2—C4—O2−160.29 (12)
C1—S1—C2—C4173.05 (10)S1—C2—C4—O226.51 (14)
C4—C2—C3—C67.2 (2)C7—O4—C6—O310.1 (2)
S1—C2—C3—C6−179.69 (10)C7—O4—C6—C3−172.26 (11)
C4—C2—C3—S2−170.52 (10)C2—C3—C6—O3−137.60 (15)
S1—C2—C3—S22.63 (15)S2—C3—C6—O340.13 (17)
C1—S2—C3—C2−3.06 (11)C2—C3—C6—O444.73 (18)
C1—S2—C3—C6178.99 (10)S2—C3—C6—O4−137.54 (10)
D—H···AD—HH···AD···AD—H···A
C7—H7A···S1ii0.962.833.735 (2)158
C5—H5A···O1iii0.962.503.324 (2)143
C5—H5C···O3iv0.962.653.481 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7A⋯S1i 0.962.833.735 (2)158
C5—H5A⋯O1ii 0.962.503.324 (2)143
C5—H5C⋯O3iii 0.962.653.481 (2)145

Symmetry codes: (i) ; (ii) ; (iii) .

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