| Literature DB >> 22904820 |
B Thimme Gowda, Sabine Foro, Sharatha Kumar.
Abstract
In the crystal structure of the title compound, C(9)H(8)Cl(2)N(2)OS, there are two mol-ecules in the asymmetric unit which are connected by a pair of N-H⋯S hydrogen bonds. An intra-molecular N-H⋯O hydrogen bond stabilizes the mol-ecular conformation of each molecule.Entities:
Year: 2012 PMID: 22904820 PMCID: PMC3414287 DOI: 10.1107/S1600536812030176
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8Cl2N2OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4895 reflections | |
| θ = 2.5–27.7° | |
| µ = 0.74 mm−1 | |
| α = 90.044 (6)° | |
| β = 91.099 (6)° | Prism, light yellow |
| γ = 100.208 (6)° | 0.46 × 0.44 × 0.36 mm |
| Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector | 4578 independent reflections |
| Radiation source: fine-focus sealed tube | 3885 reflections with |
| Graphite monochromator | |
| Rotation method data acquisition using ω scans | θmax = 26.4°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 7971 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4578 reflections | (Δ/σ)max = 0.002 |
| 285 parameters | Δρmax = 0.67 e Å−3 |
| 4 restraints | Δρmin = −0.72 e Å−3 |
| Experimental. CrysAlis RED (Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.39378 (10) | 0.64301 (8) | −0.04620 (5) | 0.0675 (2) | |
| Cl2 | 0.51017 (13) | 0.81095 (13) | −0.21801 (5) | 0.0956 (3) | |
| S1 | 0.86892 (8) | 0.69266 (7) | 0.15722 (5) | 0.05361 (18) | |
| O1 | 0.3014 (2) | 0.6735 (2) | 0.21951 (13) | 0.0687 (6) | |
| N1 | 0.5647 (3) | 0.7665 (2) | 0.11819 (13) | 0.0457 (5) | |
| H1N | 0.458 (2) | 0.754 (3) | 0.1305 (18) | 0.055* | |
| N2 | 0.5747 (2) | 0.6306 (2) | 0.24233 (12) | 0.0397 (4) | |
| H2N | 0.639 (3) | 0.591 (3) | 0.2760 (15) | 0.048* | |
| C1 | 0.6232 (3) | 0.8420 (2) | 0.04055 (15) | 0.0412 (5) | |
| C2 | 0.5487 (3) | 0.7949 (3) | −0.04025 (16) | 0.0441 (5) | |
| C3 | 0.5999 (3) | 0.8705 (3) | −0.11636 (17) | 0.0526 (6) | |
| C4 | 0.7246 (3) | 0.9910 (3) | −0.11191 (19) | 0.0561 (7) | |
| H4 | 0.7589 | 1.0412 | −0.1630 | 0.067* | |
| C5 | 0.7983 (3) | 1.0369 (3) | −0.0314 (2) | 0.0564 (7) | |
| H5 | 0.8827 | 1.1182 | −0.0283 | 0.068* | |
| C6 | 0.7479 (3) | 0.9632 (3) | 0.04515 (18) | 0.0512 (6) | |
| H6 | 0.7977 | 0.9951 | 0.0993 | 0.061* | |
| C7 | 0.6603 (3) | 0.6990 (2) | 0.17092 (14) | 0.0374 (5) | |
| C8 | 0.4039 (3) | 0.6220 (3) | 0.26475 (16) | 0.0451 (5) | |
| C9 | 0.3545 (3) | 0.5463 (3) | 0.34875 (18) | 0.0607 (7) | |
| H9A | 0.2336 | 0.5439 | 0.3587 | 0.073* | |
| H9B | 0.4214 | 0.5949 | 0.3969 | 0.073* | |
| H9C | 0.3768 | 0.4513 | 0.3449 | 0.073* | |
| Cl3 | 0.68592 (11) | −0.06753 (7) | 0.35412 (5) | 0.0693 (2) | |
| Cl4 | 0.60530 (13) | −0.20874 (9) | 0.53971 (7) | 0.0884 (3) | |
| S2 | 0.78757 (8) | 0.45828 (6) | 0.39216 (4) | 0.04733 (16) | |
| O2 | 1.0172 (3) | 0.1780 (2) | 0.20337 (14) | 0.0772 (6) | |
| N3 | 0.9002 (3) | 0.2163 (2) | 0.36075 (13) | 0.0453 (5) | |
| H3N | 0.932 (3) | 0.169 (3) | 0.3223 (15) | 0.054* | |
| N4 | 0.9362 (3) | 0.3818 (2) | 0.24969 (13) | 0.0432 (4) | |
| H4N | 0.924 (3) | 0.463 (2) | 0.2336 (17) | 0.052* | |
| C10 | 0.8602 (3) | 0.1564 (2) | 0.44498 (15) | 0.0405 (5) | |
| C11 | 0.7626 (3) | 0.0208 (2) | 0.44964 (16) | 0.0440 (5) | |
| C12 | 0.7286 (3) | −0.0417 (3) | 0.53190 (18) | 0.0531 (6) | |
| C13 | 0.7920 (4) | 0.0296 (3) | 0.60792 (18) | 0.0591 (7) | |
| H13 | 0.7690 | −0.0126 | 0.6627 | 0.071* | |
| C14 | 0.8890 (4) | 0.1627 (3) | 0.60259 (17) | 0.0570 (7) | |
| H14 | 0.9317 | 0.2107 | 0.6540 | 0.068* | |
| C15 | 0.9241 (3) | 0.2264 (3) | 0.52160 (16) | 0.0494 (6) | |
| H15 | 0.9908 | 0.3166 | 0.5187 | 0.059* | |
| C16 | 0.8777 (3) | 0.3440 (2) | 0.33372 (14) | 0.0378 (5) | |
| C17 | 1.0071 (3) | 0.3013 (3) | 0.18971 (17) | 0.0509 (6) | |
| C18 | 1.0707 (4) | 0.3771 (3) | 0.10721 (18) | 0.0633 (7) | |
| H18A | 1.0801 | 0.3093 | 0.0618 | 0.076* | |
| H18B | 1.1822 | 0.4344 | 0.1187 | 0.076* | |
| H18C | 0.9906 | 0.4364 | 0.0882 | 0.076* |
| Cl1 | 0.0655 (4) | 0.0654 (4) | 0.0644 (4) | −0.0075 (3) | −0.0080 (3) | 0.0111 (3) |
| Cl2 | 0.0922 (6) | 0.1402 (9) | 0.0462 (4) | −0.0007 (6) | −0.0098 (4) | 0.0234 (5) |
| S1 | 0.0414 (3) | 0.0606 (4) | 0.0619 (4) | 0.0158 (3) | 0.0148 (3) | 0.0243 (3) |
| O1 | 0.0413 (10) | 0.1009 (16) | 0.0665 (12) | 0.0190 (10) | 0.0075 (9) | 0.0325 (11) |
| N1 | 0.0369 (10) | 0.0585 (12) | 0.0425 (11) | 0.0101 (9) | 0.0053 (8) | 0.0153 (9) |
| N2 | 0.0370 (10) | 0.0457 (10) | 0.0369 (10) | 0.0085 (8) | 0.0031 (8) | 0.0084 (8) |
| C1 | 0.0373 (11) | 0.0450 (12) | 0.0440 (12) | 0.0140 (9) | 0.0063 (9) | 0.0114 (10) |
| C2 | 0.0390 (12) | 0.0481 (13) | 0.0469 (13) | 0.0124 (10) | 0.0013 (10) | 0.0109 (10) |
| C3 | 0.0494 (14) | 0.0666 (16) | 0.0448 (13) | 0.0184 (12) | 0.0053 (11) | 0.0165 (12) |
| C4 | 0.0547 (15) | 0.0618 (16) | 0.0570 (16) | 0.0228 (13) | 0.0183 (12) | 0.0259 (13) |
| C5 | 0.0490 (14) | 0.0439 (13) | 0.0766 (19) | 0.0075 (11) | 0.0175 (13) | 0.0136 (12) |
| C6 | 0.0496 (14) | 0.0492 (14) | 0.0549 (15) | 0.0084 (11) | 0.0046 (11) | 0.0040 (11) |
| C7 | 0.0406 (11) | 0.0359 (11) | 0.0352 (11) | 0.0054 (9) | 0.0019 (9) | −0.0002 (8) |
| C8 | 0.0404 (12) | 0.0504 (13) | 0.0435 (13) | 0.0054 (10) | 0.0047 (10) | 0.0039 (10) |
| C9 | 0.0482 (14) | 0.0785 (19) | 0.0559 (16) | 0.0111 (13) | 0.0135 (12) | 0.0228 (14) |
| Cl3 | 0.0901 (5) | 0.0490 (4) | 0.0630 (4) | −0.0018 (3) | −0.0183 (4) | −0.0066 (3) |
| Cl4 | 0.1007 (6) | 0.0566 (4) | 0.0989 (7) | −0.0115 (4) | 0.0078 (5) | 0.0281 (4) |
| S2 | 0.0601 (4) | 0.0442 (3) | 0.0409 (3) | 0.0175 (3) | 0.0060 (3) | 0.0027 (2) |
| O2 | 0.1154 (18) | 0.0608 (13) | 0.0642 (13) | 0.0367 (12) | 0.0298 (12) | 0.0009 (10) |
| N3 | 0.0624 (13) | 0.0365 (10) | 0.0384 (10) | 0.0122 (9) | 0.0063 (9) | −0.0002 (8) |
| N4 | 0.0492 (11) | 0.0402 (10) | 0.0407 (10) | 0.0088 (9) | 0.0072 (8) | 0.0048 (8) |
| C10 | 0.0456 (12) | 0.0361 (11) | 0.0413 (12) | 0.0115 (9) | 0.0024 (9) | 0.0030 (9) |
| C11 | 0.0471 (13) | 0.0383 (12) | 0.0470 (13) | 0.0096 (10) | −0.0026 (10) | 0.0009 (10) |
| C12 | 0.0540 (14) | 0.0435 (13) | 0.0625 (16) | 0.0096 (11) | 0.0084 (12) | 0.0135 (11) |
| C13 | 0.0730 (18) | 0.0640 (17) | 0.0450 (14) | 0.0233 (14) | 0.0111 (13) | 0.0147 (12) |
| C14 | 0.0720 (18) | 0.0622 (16) | 0.0406 (13) | 0.0232 (14) | −0.0027 (12) | −0.0037 (11) |
| C15 | 0.0575 (15) | 0.0424 (13) | 0.0480 (14) | 0.0082 (11) | −0.0027 (11) | −0.0019 (10) |
| C16 | 0.0360 (11) | 0.0369 (11) | 0.0385 (11) | 0.0015 (9) | −0.0010 (9) | 0.0004 (9) |
| C17 | 0.0534 (14) | 0.0553 (15) | 0.0454 (13) | 0.0127 (12) | 0.0066 (11) | −0.0024 (11) |
| C18 | 0.0667 (17) | 0.078 (2) | 0.0479 (15) | 0.0187 (15) | 0.0160 (13) | 0.0028 (13) |
| Cl1—C2 | 1.726 (2) | Cl3—C11 | 1.719 (2) |
| Cl2—C3 | 1.734 (3) | Cl4—C12 | 1.725 (3) |
| S1—C7 | 1.666 (2) | S2—C16 | 1.669 (2) |
| O1—C8 | 1.217 (3) | O2—C17 | 1.218 (3) |
| N1—C7 | 1.330 (3) | N3—C16 | 1.332 (3) |
| N1—C1 | 1.422 (3) | N3—C10 | 1.417 (3) |
| N1—H1N | 0.846 (17) | N3—H3N | 0.808 (17) |
| N2—C8 | 1.378 (3) | N4—C17 | 1.379 (3) |
| N2—C7 | 1.387 (3) | N4—C16 | 1.388 (3) |
| N2—H2N | 0.843 (16) | N4—H4N | 0.836 (16) |
| C1—C6 | 1.382 (3) | C10—C15 | 1.381 (3) |
| C1—C2 | 1.386 (3) | C10—C11 | 1.391 (3) |
| C2—C3 | 1.390 (3) | C11—C12 | 1.392 (3) |
| C3—C4 | 1.378 (4) | C12—C13 | 1.377 (4) |
| C4—C5 | 1.377 (4) | C13—C14 | 1.370 (4) |
| C4—H4 | 0.9300 | C13—H13 | 0.9300 |
| C5—C6 | 1.385 (4) | C14—C15 | 1.381 (4) |
| C5—H5 | 0.9300 | C14—H14 | 0.9300 |
| C6—H6 | 0.9300 | C15—H15 | 0.9300 |
| C8—C9 | 1.489 (3) | C17—C18 | 1.495 (4) |
| C9—H9A | 0.9600 | C18—H18A | 0.9600 |
| C9—H9B | 0.9600 | C18—H18B | 0.9600 |
| C9—H9C | 0.9600 | C18—H18C | 0.9600 |
| C7—N1—C1 | 125.50 (19) | C16—N3—C10 | 126.43 (19) |
| C7—N1—H1N | 114.5 (19) | C16—N3—H3N | 114 (2) |
| C1—N1—H1N | 119.6 (19) | C10—N3—H3N | 120 (2) |
| C8—N2—C7 | 128.45 (19) | C17—N4—C16 | 128.0 (2) |
| C8—N2—H2N | 117.7 (18) | C17—N4—H4N | 116.8 (19) |
| C7—N2—H2N | 113.8 (18) | C16—N4—H4N | 115.1 (19) |
| C6—C1—C2 | 120.1 (2) | C15—C10—C11 | 119.8 (2) |
| C6—C1—N1 | 121.0 (2) | C15—C10—N3 | 121.4 (2) |
| C2—C1—N1 | 118.9 (2) | C11—C10—N3 | 118.8 (2) |
| C1—C2—C3 | 119.6 (2) | C10—C11—C12 | 119.3 (2) |
| C1—C2—Cl1 | 120.12 (18) | C10—C11—Cl3 | 119.74 (18) |
| C3—C2—Cl1 | 120.3 (2) | C12—C11—Cl3 | 120.92 (19) |
| C4—C3—C2 | 120.4 (2) | C13—C12—C11 | 120.4 (2) |
| C4—C3—Cl2 | 119.6 (2) | C13—C12—Cl4 | 119.3 (2) |
| C2—C3—Cl2 | 120.0 (2) | C11—C12—Cl4 | 120.3 (2) |
| C5—C4—C3 | 119.6 (2) | C14—C13—C12 | 119.8 (2) |
| C5—C4—H4 | 120.2 | C14—C13—H13 | 120.1 |
| C3—C4—H4 | 120.2 | C12—C13—H13 | 120.1 |
| C4—C5—C6 | 120.6 (2) | C13—C14—C15 | 120.7 (2) |
| C4—C5—H5 | 119.7 | C13—C14—H14 | 119.7 |
| C6—C5—H5 | 119.7 | C15—C14—H14 | 119.7 |
| C1—C6—C5 | 119.7 (3) | C10—C15—C14 | 120.0 (2) |
| C1—C6—H6 | 120.2 | C10—C15—H15 | 120.0 |
| C5—C6—H6 | 120.2 | C14—C15—H15 | 120.0 |
| N1—C7—N2 | 115.39 (19) | N3—C16—N4 | 115.5 (2) |
| N1—C7—S1 | 125.13 (17) | N3—C16—S2 | 125.53 (17) |
| N2—C7—S1 | 119.48 (16) | N4—C16—S2 | 118.93 (16) |
| O1—C8—N2 | 122.4 (2) | O2—C17—N4 | 122.3 (2) |
| O1—C8—C9 | 122.6 (2) | O2—C17—C18 | 122.8 (2) |
| N2—C8—C9 | 115.0 (2) | N4—C17—C18 | 114.9 (2) |
| C8—C9—H9A | 109.5 | C17—C18—H18A | 109.5 |
| C8—C9—H9B | 109.5 | C17—C18—H18B | 109.5 |
| H9A—C9—H9B | 109.5 | H18A—C18—H18B | 109.5 |
| C8—C9—H9C | 109.5 | C17—C18—H18C | 109.5 |
| H9A—C9—H9C | 109.5 | H18A—C18—H18C | 109.5 |
| H9B—C9—H9C | 109.5 | H18B—C18—H18C | 109.5 |
| C7—N1—C1—C6 | −65.8 (3) | C16—N3—C10—C15 | −53.7 (3) |
| C7—N1—C1—C2 | 116.5 (3) | C16—N3—C10—C11 | 130.0 (2) |
| C6—C1—C2—C3 | −0.1 (3) | C15—C10—C11—C12 | 0.9 (3) |
| N1—C1—C2—C3 | 177.6 (2) | N3—C10—C11—C12 | 177.3 (2) |
| C6—C1—C2—Cl1 | 179.65 (18) | C15—C10—C11—Cl3 | −178.97 (19) |
| N1—C1—C2—Cl1 | −2.6 (3) | N3—C10—C11—Cl3 | −2.6 (3) |
| C1—C2—C3—C4 | 0.4 (4) | C10—C11—C12—C13 | −0.4 (4) |
| Cl1—C2—C3—C4 | −179.44 (19) | Cl3—C11—C12—C13 | 179.4 (2) |
| C1—C2—C3—Cl2 | 178.94 (18) | C10—C11—C12—Cl4 | 179.07 (18) |
| Cl1—C2—C3—Cl2 | −0.9 (3) | Cl3—C11—C12—Cl4 | −1.1 (3) |
| C2—C3—C4—C5 | −0.2 (4) | C11—C12—C13—C14 | 0.0 (4) |
| Cl2—C3—C4—C5 | −178.8 (2) | Cl4—C12—C13—C14 | −179.5 (2) |
| C3—C4—C5—C6 | −0.2 (4) | C12—C13—C14—C15 | 0.0 (4) |
| C2—C1—C6—C5 | −0.2 (4) | C11—C10—C15—C14 | −0.9 (4) |
| N1—C1—C6—C5 | −177.9 (2) | N3—C10—C15—C14 | −177.2 (2) |
| C4—C5—C6—C1 | 0.4 (4) | C13—C14—C15—C10 | 0.5 (4) |
| C1—N1—C7—N2 | −179.0 (2) | C10—N3—C16—N4 | 176.4 (2) |
| C1—N1—C7—S1 | 1.4 (4) | C10—N3—C16—S2 | −3.3 (4) |
| C8—N2—C7—N1 | 1.1 (3) | C17—N4—C16—N3 | 3.3 (3) |
| C8—N2—C7—S1 | −179.31 (19) | C17—N4—C16—S2 | −177.0 (2) |
| C7—N2—C8—O1 | 2.5 (4) | C16—N4—C17—O2 | 4.5 (4) |
| C7—N2—C8—C9 | −177.0 (2) | C16—N4—C17—C18 | −175.3 (2) |
| H··· | ||||
| N1—H1 | 0.85 (2) | 1.91 (2) | 2.625 (3) | 141 (3) |
| N2—H2 | 0.84 (2) | 2.56 (2) | 3.393 (2) | 171 (2) |
| N3—H3 | 0.81 (2) | 1.93 (2) | 2.619 (3) | 143 (3) |
| N4—H4 | 0.84 (2) | 2.59 (2) | 3.418 (2) | 170 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1N⋯O1 | 0.85 (2) | 1.91 (2) | 2.625 (3) | 141 (3) |
| N2—H2N⋯S2 | 0.84 (2) | 2.56 (2) | 3.393 (2) | 171 (2) |
| N3—H3N⋯O2 | 0.81 (2) | 1.93 (2) | 2.619 (3) | 143 (3) |
| N4—H4N⋯S1 | 0.84 (2) | 2.59 (2) | 3.418 (2) | 170 (2) |