Literature DB >> 22904811

Methyl 2-(4-meth-oxy-3-nitro-benzamido)-acetate.

Xin Zhu1, Qiujuan Ma.   

Abstract

The title compound, C(11)H(12)N(2)O(6), crystallizes with two independent mol-ecules in the asymmetric unit, which differ slightly in conformation. The dihedral angle between the amide O=C-N plane and the attached benzene ring is 19.5 (3)° in one mol-ecule and 23.4 (3)° in the other. In the crystal, the two independent mol-ecules are connected alternately by N-H⋯O hydrogen bonds, forming a chain along the a axis.

Entities:  

Year:  2012        PMID: 22904811      PMCID: PMC3414278          DOI: 10.1107/S1600536812029522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of compounds with nitro and ester groups, see: Sykes et al. (1999 ▶). For a related structure, see: Wu et al. (2011 ▶).

Experimental

Crystal data

C11H12N2O6 M = 268.23 Monoclinic, a = 10.4378 (7) Å b = 13.9110 (9) Å c = 17.5420 (15) Å β = 106.146 (8)° V = 2446.6 (3) Å3 Z = 8 Cu Kα radiation μ = 1.04 mm−1 T = 291 K 0.28 × 0.26 × 0.24 mm

Data collection

Agilent Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.760, T max = 0.789 10600 measured reflections 4251 independent reflections 3287 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.155 S = 1.04 4251 reflections 356 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2011 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029522/is5151sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029522/is5151Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029522/is5151Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O6F(000) = 1120
Mr = 268.23Dx = 1.456 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 3206 reflections
a = 10.4378 (7) Åθ = 3.2–67.0°
b = 13.9110 (9) ŵ = 1.04 mm1
c = 17.5420 (15) ÅT = 291 K
β = 106.146 (8)°Block, colorless
V = 2446.6 (3) Å30.28 × 0.26 × 0.24 mm
Z = 8
Agilent Xcalibur Eos Gemini diffractometer4251 independent reflections
Radiation source: fine-focus sealed tube3287 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
ω scansθmax = 67.0°, θmin = 4.1°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −12→12
Tmin = 0.760, Tmax = 0.789k = −16→16
10600 measured reflectionsl = −20→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.155w = 1/[σ2(Fo2) + (0.073P)2 + 0.8379P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.004
4251 reflectionsΔρmax = 0.50 e Å3
356 parametersΔρmin = −0.31 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00093 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7104 (2)0.31701 (14)0.29328 (12)0.0732 (6)
O1'0.18346 (19)1.11580 (13)0.30677 (12)0.0671 (5)
O20.9503 (2)0.31213 (17)0.3839 (2)0.1162 (11)
O2'0.4242 (2)1.12599 (15)0.40786 (18)0.0981 (9)
O31.0472 (2)0.44345 (17)0.41534 (18)0.1013 (9)
O3'0.5286 (2)0.99534 (16)0.41347 (19)0.1039 (9)
O40.58759 (15)0.72298 (13)0.42220 (11)0.0593 (5)
O4'0.09322 (15)0.69905 (12)0.43303 (11)0.0576 (5)
O50.7439 (2)0.90062 (15)0.34121 (12)0.0724 (6)
O5'0.2464 (2)0.54205 (14)0.32784 (11)0.0677 (5)
O60.82081 (18)0.99909 (13)0.44488 (13)0.0688 (5)
O6'0.33449 (16)0.43396 (11)0.42284 (11)0.0563 (4)
N10.9474 (2)0.39794 (16)0.38787 (13)0.0579 (5)
N1'0.4254 (2)1.04059 (14)0.39950 (14)0.0569 (5)
N20.80857 (19)0.74112 (15)0.44094 (13)0.0523 (5)
N2'0.31167 (18)0.68992 (14)0.43984 (12)0.0473 (5)
C10.7024 (2)0.40601 (18)0.32103 (14)0.0530 (6)
C1'0.1806 (2)1.02642 (16)0.33482 (14)0.0483 (5)
C20.8203 (2)0.44932 (17)0.36718 (13)0.0457 (5)
C2'0.3009 (2)0.98568 (16)0.38040 (14)0.0454 (5)
C30.8207 (2)0.54128 (17)0.39638 (13)0.0443 (5)
H30.90070.56880.42530.053*
C3'0.3080 (2)0.89318 (15)0.40887 (13)0.0432 (5)
H3'0.38960.86790.43770.052*
C40.7030 (2)0.59338 (17)0.38321 (13)0.0458 (5)
C4'0.1937 (2)0.83750 (16)0.39470 (13)0.0433 (5)
C50.5861 (2)0.55008 (19)0.33762 (15)0.0545 (6)
H50.50610.58360.32830.065*
C5'0.0740 (2)0.87772 (17)0.35111 (14)0.0486 (5)
H5'−0.00380.84170.34230.058*
C60.5852 (2)0.45980 (19)0.30610 (16)0.0588 (7)
H60.50580.43420.27450.071*
C6'0.0668 (2)0.96912 (17)0.32055 (15)0.0530 (6)
H6'−0.01460.99300.29010.064*
C70.6947 (2)0.69072 (17)0.41681 (13)0.0464 (5)
C7'0.1950 (2)0.73673 (16)0.42440 (13)0.0426 (5)
C80.8122 (3)0.83675 (19)0.47275 (15)0.0569 (6)
H8A0.89880.84740.51030.068*
H8B0.74550.84180.50150.068*
C8'0.3254 (2)0.59067 (16)0.46412 (14)0.0495 (6)
H8'A0.26550.57770.49640.059*
H8'B0.41580.57990.49690.059*
C90.7875 (2)0.91368 (18)0.41080 (17)0.0528 (6)
C9'0.2959 (2)0.52156 (16)0.39587 (14)0.0458 (5)
C100.7937 (3)1.0825 (2)0.3943 (2)0.0863 (10)
H10D0.85401.13330.41800.130*
H10E0.70361.10330.38780.130*
H10F0.80551.06670.34340.130*
C10'0.3005 (3)0.3553 (2)0.3677 (2)0.0757 (9)
H10A0.36530.30500.38390.114*
H10B0.29970.37730.31560.114*
H10C0.21380.33120.36660.114*
C110.5910 (4)0.2707 (2)0.2494 (2)0.0936 (11)
H11D0.53370.26080.28310.140*
H11E0.61250.20980.23040.140*
H11F0.54630.31030.20520.140*
C11'0.0631 (3)1.1560 (2)0.25777 (19)0.0801 (9)
H11A−0.00021.16300.28800.120*
H11B0.02701.11430.21340.120*
H11C0.08141.21790.23890.120*
H2'0.3781 (19)0.7135 (17)0.4293 (14)0.049 (7)*
H20.8799 (19)0.7210 (17)0.4351 (15)0.049 (7)*
U11U22U33U12U13U23
O10.0720 (12)0.0635 (12)0.0763 (13)−0.0131 (10)0.0076 (10)−0.0211 (10)
O1'0.0693 (11)0.0466 (10)0.0737 (12)0.0043 (9)0.0004 (9)0.0127 (9)
O20.0815 (16)0.0625 (14)0.180 (3)0.0145 (12)−0.0038 (17)−0.0290 (16)
O2'0.0691 (13)0.0446 (12)0.163 (2)−0.0081 (10)0.0032 (14)0.0035 (13)
O30.0439 (11)0.0780 (15)0.173 (3)0.0028 (10)0.0148 (13)−0.0273 (16)
O3'0.0447 (11)0.0661 (14)0.199 (3)−0.0027 (10)0.0301 (14)0.0091 (15)
O40.0399 (8)0.0660 (11)0.0736 (11)0.0104 (8)0.0183 (8)0.0060 (9)
O4'0.0395 (8)0.0518 (10)0.0837 (12)−0.0066 (7)0.0210 (8)0.0000 (9)
O50.0894 (14)0.0647 (12)0.0632 (12)−0.0003 (11)0.0215 (11)−0.0005 (9)
O5'0.0811 (13)0.0605 (11)0.0553 (11)0.0090 (10)0.0086 (10)0.0041 (9)
O60.0583 (10)0.0522 (11)0.0941 (14)−0.0040 (8)0.0180 (10)−0.0118 (10)
O6'0.0528 (9)0.0393 (9)0.0741 (11)0.0058 (7)0.0132 (8)0.0056 (8)
N10.0502 (12)0.0539 (13)0.0684 (13)0.0031 (10)0.0143 (10)−0.0125 (10)
N1'0.0493 (11)0.0408 (11)0.0788 (15)−0.0036 (9)0.0149 (10)0.0020 (10)
N20.0395 (10)0.0490 (12)0.0679 (13)0.0062 (9)0.0140 (9)−0.0024 (10)
N2'0.0375 (9)0.0394 (10)0.0666 (13)−0.0009 (8)0.0168 (9)0.0045 (9)
C10.0555 (14)0.0541 (14)0.0476 (13)−0.0105 (11)0.0112 (11)−0.0020 (11)
C1'0.0517 (13)0.0397 (12)0.0506 (13)0.0065 (10)0.0095 (10)−0.0031 (10)
C20.0425 (11)0.0498 (13)0.0456 (12)−0.0012 (10)0.0137 (10)0.0001 (10)
C2'0.0402 (11)0.0408 (12)0.0546 (13)−0.0012 (9)0.0120 (10)−0.0048 (10)
C30.0367 (10)0.0510 (13)0.0449 (12)−0.0048 (9)0.0110 (9)0.0004 (10)
C3'0.0352 (10)0.0391 (11)0.0519 (12)0.0022 (9)0.0066 (9)−0.0029 (9)
C40.0374 (11)0.0491 (13)0.0504 (12)−0.0006 (9)0.0113 (9)0.0100 (10)
C4'0.0379 (11)0.0395 (11)0.0515 (12)0.0002 (9)0.0109 (9)−0.0070 (10)
C50.0384 (12)0.0568 (15)0.0643 (15)0.0003 (10)0.0077 (11)0.0135 (12)
C5'0.0364 (11)0.0449 (12)0.0614 (14)0.0004 (9)0.0087 (10)−0.0089 (10)
C60.0425 (12)0.0654 (16)0.0598 (15)−0.0136 (11)−0.0003 (11)0.0053 (13)
C6'0.0397 (11)0.0505 (14)0.0610 (14)0.0076 (10)0.0011 (10)−0.0072 (11)
C70.0382 (11)0.0536 (13)0.0471 (12)0.0056 (10)0.0116 (9)0.0109 (10)
C7'0.0351 (10)0.0414 (12)0.0504 (12)−0.0035 (9)0.0107 (9)−0.0060 (9)
C80.0499 (13)0.0579 (15)0.0592 (15)0.0042 (11)0.0090 (11)−0.0081 (12)
C8'0.0456 (12)0.0432 (12)0.0568 (14)0.0009 (10)0.0096 (10)0.0064 (10)
C90.0385 (11)0.0514 (14)0.0693 (17)0.0001 (10)0.0162 (11)−0.0076 (12)
C9'0.0349 (10)0.0453 (12)0.0553 (14)0.0019 (9)0.0096 (10)0.0067 (10)
C100.088 (2)0.0523 (17)0.130 (3)−0.0070 (16)0.050 (2)0.0034 (18)
C10'0.082 (2)0.0484 (15)0.103 (2)−0.0009 (14)0.0353 (18)−0.0128 (15)
C110.092 (2)0.074 (2)0.101 (3)−0.0303 (18)0.005 (2)−0.0312 (19)
C11'0.091 (2)0.0580 (17)0.0742 (19)0.0170 (16)−0.0049 (17)0.0139 (14)
O1—C11.341 (3)C3—H30.9300
O1—C111.424 (3)C3'—C4'1.385 (3)
O1'—C1'1.340 (3)C3'—H3'0.9300
O1'—C11'1.424 (3)C4—C51.396 (3)
O2—N11.197 (3)C4—C71.489 (3)
O2'—N1'1.197 (3)C4'—C5'1.389 (3)
O3—N11.200 (3)C4'—C7'1.494 (3)
O3'—N1'1.213 (3)C5—C61.371 (4)
O4—C71.233 (3)C5—H50.9300
O4'—C7'1.231 (2)C5'—C6'1.374 (3)
O5—C91.192 (3)C5'—H5'0.9300
O5'—C9'1.195 (3)C6—H60.9300
O6—C91.332 (3)C6'—H6'0.9300
O6—C101.440 (4)C8—C91.496 (4)
O6'—C9'1.328 (3)C8—H8A0.9700
O6'—C10'1.438 (3)C8—H8B0.9700
N1—C21.461 (3)C8'—C9'1.499 (3)
N1'—C2'1.463 (3)C8'—H8'A0.9700
N2—C71.343 (3)C8'—H8'B0.9700
N2—C81.439 (3)C10—H10D0.9600
N2—H20.828 (16)C10—H10E0.9600
N2'—C7'1.341 (3)C10—H10F0.9600
N2'—C8'1.440 (3)C10'—H10A0.9600
N2'—H2'0.833 (16)C10'—H10B0.9600
C1—C61.395 (4)C10'—H10C0.9600
C1—C21.407 (3)C11—H11D0.9600
C1'—C6'1.394 (3)C11—H11E0.9600
C1'—C2'1.407 (3)C11—H11F0.9600
C2—C31.378 (3)C11'—H11A0.9600
C2'—C3'1.375 (3)C11'—H11B0.9600
C3—C41.389 (3)C11'—H11C0.9600
C1—O1—C11118.7 (2)C5'—C6'—H6'119.7
C1'—O1'—C11'118.7 (2)C1'—C6'—H6'119.7
C9—O6—C10117.4 (2)O4—C7—N2121.9 (2)
C9'—O6'—C10'117.7 (2)O4—C7—C4121.0 (2)
O2—N1—O3121.1 (2)N2—C7—C4117.11 (19)
O2—N1—C2120.6 (2)O4'—C7'—N2'122.3 (2)
O3—N1—C2118.0 (2)O4'—C7'—C4'121.19 (19)
O2'—N1'—O3'121.9 (2)N2'—C7'—C4'116.47 (18)
O2'—N1'—C2'120.5 (2)N2—C8—C9113.5 (2)
O3'—N1'—C2'117.2 (2)N2—C8—H8A108.9
C7—N2—C8122.0 (2)C9—C8—H8A108.9
C7—N2—H2122.2 (18)N2—C8—H8B108.9
C8—N2—H2115.6 (18)C9—C8—H8B108.9
C7'—N2'—C8'122.38 (19)H8A—C8—H8B107.7
C7'—N2'—H2'122.0 (17)N2'—C8'—C9'113.4 (2)
C8'—N2'—H2'115.0 (17)N2'—C8'—H8'A108.9
O1—C1—C6124.5 (2)C9'—C8'—H8'A108.9
O1—C1—C2118.1 (2)N2'—C8'—H8'B108.9
C6—C1—C2117.4 (2)C9'—C8'—H8'B108.9
O1'—C1'—C6'124.7 (2)H8'A—C8'—H8'B107.7
O1'—C1'—C2'118.3 (2)O5—C9—O6125.0 (3)
C6'—C1'—C2'116.9 (2)O5—C9—C8125.1 (2)
C3—C2—C1121.5 (2)O6—C9—C8110.0 (2)
C3—C2—N1117.0 (2)O5'—C9'—O6'125.3 (2)
C1—C2—N1121.5 (2)O5'—C9'—C8'125.5 (2)
C3'—C2'—C1'122.2 (2)O6'—C9'—C8'109.2 (2)
C3'—C2'—N1'116.83 (19)O6—C10—H10D109.5
C1'—C2'—N1'121.0 (2)O6—C10—H10E109.5
C2—C3—C4120.8 (2)H10D—C10—H10E109.5
C2—C3—H3119.6O6—C10—H10F109.5
C4—C3—H3119.6H10D—C10—H10F109.5
C2'—C3'—C4'120.1 (2)H10E—C10—H10F109.5
C2'—C3'—H3'119.9O6'—C10'—H10A109.5
C4'—C3'—H3'119.9O6'—C10'—H10B109.5
C3—C4—C5117.5 (2)H10A—C10'—H10B109.5
C3—C4—C7123.7 (2)O6'—C10'—H10C109.5
C5—C4—C7118.8 (2)H10A—C10'—H10C109.5
C3'—C4'—C5'118.1 (2)H10B—C10'—H10C109.5
C3'—C4'—C7'122.56 (19)O1—C11—H11D109.5
C5'—C4'—C7'119.31 (19)O1—C11—H11E109.5
C6—C5—C4122.2 (2)H11D—C11—H11E109.5
C6—C5—H5118.9O1—C11—H11F109.5
C4—C5—H5118.9H11D—C11—H11F109.5
C6'—C5'—C4'122.0 (2)H11E—C11—H11F109.5
C6'—C5'—H5'119.0O1'—C11'—H11A109.5
C4'—C5'—H5'119.0O1'—C11'—H11B109.5
C5—C6—C1120.5 (2)H11A—C11'—H11B109.5
C5—C6—H6119.7O1'—C11'—H11C109.5
C1—C6—H6119.7H11A—C11'—H11C109.5
C5'—C6'—C1'120.5 (2)H11B—C11'—H11C109.5
C11—O1—C1—C6−3.9 (4)C3'—C4'—C5'—C6'1.6 (3)
C11—O1—C1—C2177.3 (3)C7'—C4'—C5'—C6'−178.4 (2)
C11'—O1'—C1'—C6'−1.0 (4)C4—C5—C6—C12.2 (4)
C11'—O1'—C1'—C2'177.4 (2)O1—C1—C6—C5179.4 (2)
O1—C1—C2—C3178.6 (2)C2—C1—C6—C5−1.9 (4)
C6—C1—C2—C3−0.2 (3)C4'—C5'—C6'—C1'−2.2 (4)
O1—C1—C2—N1−2.8 (3)O1'—C1'—C6'—C5'179.2 (2)
C6—C1—C2—N1178.3 (2)C2'—C1'—C6'—C5'0.9 (4)
O2—N1—C2—C3159.7 (3)C8—N2—C7—O4−1.6 (4)
O3—N1—C2—C3−13.9 (4)C8—N2—C7—C4178.6 (2)
O2—N1—C2—C1−18.9 (4)C3—C4—C7—O4−160.1 (2)
O3—N1—C2—C1167.5 (3)C5—C4—C7—O418.0 (3)
O1'—C1'—C2'—C3'−177.4 (2)C3—C4—C7—N219.8 (3)
C6'—C1'—C2'—C3'1.0 (3)C5—C4—C7—N2−162.1 (2)
O1'—C1'—C2'—N1'2.4 (3)C8'—N2'—C7'—O4'3.0 (4)
C6'—C1'—C2'—N1'−179.1 (2)C8'—N2'—C7'—C4'−176.1 (2)
O2'—N1'—C2'—C3'−148.6 (3)C3'—C4'—C7'—O4'157.6 (2)
O3'—N1'—C2'—C3'24.8 (4)C5'—C4'—C7'—O4'−22.4 (3)
O2'—N1'—C2'—C1'31.6 (4)C3'—C4'—C7'—N2'−23.3 (3)
O3'—N1'—C2'—C1'−155.0 (3)C5'—C4'—C7'—N2'156.7 (2)
C1—C2—C3—C42.1 (3)C7—N2—C8—C9−88.1 (3)
N1—C2—C3—C4−176.5 (2)C7'—N2'—C8'—C9'87.3 (3)
C1'—C2'—C3'—C4'−1.6 (4)C10—O6—C9—O54.3 (4)
N1'—C2'—C3'—C4'178.5 (2)C10—O6—C9—C8−175.3 (2)
C2—C3—C4—C5−1.8 (3)N2—C8—C9—O513.9 (4)
C2—C3—C4—C7176.4 (2)N2—C8—C9—O6−166.5 (2)
C2'—C3'—C4'—C5'0.3 (3)C10'—O6'—C9'—O5'−7.6 (4)
C2'—C3'—C4'—C7'−179.7 (2)C10'—O6'—C9'—C8'172.9 (2)
C3—C4—C5—C6−0.3 (4)N2'—C8'—C9'—O5'−10.9 (3)
C7—C4—C5—C6−178.6 (2)N2'—C8'—C9'—O6'168.53 (18)
D—H···AD—HH···AD···AD—H···A
N2—H2···O4′i0.83 (2)2.26 (2)3.069 (2)167 (2)
N2′—H2′···O40.83 (2)2.23 (2)3.016 (2)158 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O4′i 0.83 (2)2.26 (2)3.069 (2)167 (2)
N2′—H2′⋯O40.83 (2)2.23 (2)3.016 (2)158 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-Substituted 2-(2,6-dinitrophenylamino)propanamides: novel prodrugs that release a primary amine via nitroreduction and intramolecular cyclization.

Authors:  B M Sykes; G J Atwell; A Hogg; W R Wilson; C J O'Connor; W A Denny
Journal:  J Med Chem       Date:  1999-02-11       Impact factor: 7.446

3.  Methyl 2-(4-chloro-3,5-dinitro-benz-amido)-acetate.

Authors:  Xiang-Xiang Wu; Xue-Fen Wu; Yi-Min Hou; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30
  3 in total

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