Literature DB >> 22904797

N-(2,4-Difluoro-phen-yl)-5-methyl-1,2-oxazole-4-carboxamide hemihydrate.

Jian-Guang Yu, Hai-Xi Zhu, Jiang-Kai Qiu, De-Cai Wang, Hong Xu.   

Abstract

In the title compound, C(11)H(8)F(2)N(2)O(2)·0.5H(2)O, the dihedral angle between the benzene and isoxazole rings is 8.08 (3)°. In the crystal, the components are linked by O-H⋯N and N-H⋯O hydrogen bonds, in which the water mol-ecule acts as both a donor and an acceptor, into a tape with an R(4) (4)(16) graph-set motif along the a axis. The water mol-ecule is located on a twofold rotation axis. The methyl H atoms were treated as disordered groups over two sites with a refined site-occupancy ratio of 0.48 (6):0.52 (6).

Entities:  

Year:  2012        PMID: 22904797      PMCID: PMC3414190          DOI: 10.1107/S1600536812029431

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of leflunomide [systematic name: 5-methyl-N-[4-(trifluoro­meth­yl) phen­yl]-isoxazole-4-carboxamide] in the treatment of rheumatoid arthritis, see: Shaw et al. (2011 ▶); Schattenkirchner (2000 ▶); For leflunomide analogs, see: Huang et al. (2003 ▶). For graph-set motifs, see: Bernstein, et al. (1995 ▶).

Experimental

Crystal data

C11H8F2N2O2·0.5H2O M = 247.20 Monoclinic, a = 15.182 (3) Å b = 13.803 (3) Å c = 12.159 (2) Å β = 120.06 (3)° V = 2205.3 (8) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: multi-scan (North et al., 1968 ▶) T min = 0.962, T max = 0.987 2076 measured reflections 1997 independent reflections 1486 reflections with I > 2σ(I) R int = 0.050 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.130 S = 1.04 1997 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029431/nk2167sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029431/nk2167Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029431/nk2167Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8F2N2O2·0.5H2OF(000) = 1016
Mr = 247.20Dx = 1.489 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 15.182 (3) Åθ = 9–13°
b = 13.803 (3) ŵ = 0.13 mm1
c = 12.159 (2) ÅT = 293 K
β = 120.06 (3)°Block, white
V = 2205.3 (8) Å30.30 × 0.20 × 0.10 mm
Z = 8
Enraf–Nonius CAD-4 diffractometer1486 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.050
Graphite monochromatorθmax = 25.2°, θmin = 2.1°
ω/2θ scansh = 0→18
Absorption correction: multi-scan (North et al., 1968)k = 0→16
Tmin = 0.962, Tmax = 0.987l = −14→12
2076 measured reflections3 standard reflections every 200 reflections
1997 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.060P)2 + 1.6P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1997 reflectionsΔρmax = 0.28 e Å3
168 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0247 (19)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O1W0.50000.52321 (17)0.25000.0620 (7)
H1W0.505 (2)0.564 (2)0.193 (3)0.093*
N10.65863 (15)0.36286 (13)0.32726 (18)0.0484 (5)
H1A0.6314 (18)0.4180 (19)0.332 (2)0.058*
O10.66094 (13)0.20060 (11)0.36060 (16)0.0611 (5)
F10.88573 (17)0.40738 (15)0.0910 (2)0.1141 (8)
C10.75004 (19)0.28877 (17)0.2259 (2)0.0584 (6)
H1B0.73360.22630.23810.070*
F20.71615 (12)0.53616 (10)0.28913 (16)0.0739 (5)
O20.49066 (13)0.27282 (12)0.53567 (16)0.0615 (5)
N20.51344 (18)0.37236 (15)0.5487 (2)0.0658 (6)
C20.8072 (2)0.3024 (2)0.1673 (3)0.0720 (8)
H2B0.82930.24950.14030.086*
C30.8304 (2)0.3937 (2)0.1496 (3)0.0720 (8)
C40.80009 (19)0.47406 (19)0.1878 (2)0.0649 (7)
H4A0.81620.53620.17420.078*
C50.74512 (18)0.45851 (16)0.2468 (2)0.0530 (6)
C60.71701 (16)0.36750 (15)0.2668 (2)0.0461 (5)
C70.63608 (16)0.28191 (15)0.37245 (19)0.0454 (5)
C80.57905 (16)0.30012 (15)0.43950 (19)0.0450 (5)
C90.56469 (19)0.38588 (17)0.4907 (2)0.0556 (6)
H9A0.58930.44600.48380.067*
C100.53140 (17)0.23129 (16)0.4714 (2)0.0492 (6)
C110.5167 (2)0.12579 (18)0.4509 (3)0.0674 (7)
H11A0.47390.10280.48270.101*0.48 (6)
H11B0.58150.09380.49500.101*0.48 (6)
H11C0.48500.11210.36170.101*0.48 (6)
H11D0.54230.10490.39700.101*0.52 (6)
H11E0.44540.11090.41120.101*0.52 (6)
H11F0.55260.09290.53110.101*0.52 (6)
U11U22U33U12U13U23
O1W0.0925 (18)0.0490 (13)0.0742 (16)0.0000.0640 (15)0.000
N10.0634 (12)0.0366 (9)0.0596 (11)0.0022 (8)0.0415 (10)0.0026 (8)
O10.0854 (12)0.0377 (9)0.0823 (12)0.0037 (8)0.0584 (10)0.0019 (8)
F10.1517 (18)0.1052 (14)0.1635 (19)0.0058 (12)0.1374 (17)0.0148 (13)
C10.0760 (16)0.0463 (12)0.0695 (15)−0.0001 (11)0.0489 (14)0.0005 (11)
F20.0977 (11)0.0427 (8)0.1108 (12)−0.0031 (7)0.0743 (10)−0.0029 (7)
O20.0787 (11)0.0558 (10)0.0700 (11)−0.0022 (8)0.0522 (9)0.0004 (8)
N20.0953 (16)0.0509 (12)0.0720 (14)−0.0040 (11)0.0574 (14)−0.0064 (10)
C20.092 (2)0.0656 (17)0.0854 (18)0.0076 (14)0.0646 (17)0.0003 (14)
C30.0829 (19)0.0760 (18)0.0865 (19)−0.0005 (15)0.0644 (17)0.0076 (15)
C40.0736 (17)0.0581 (15)0.0808 (18)−0.0062 (13)0.0518 (15)0.0070 (13)
C50.0591 (13)0.0448 (12)0.0642 (14)0.0004 (10)0.0376 (12)0.0015 (10)
C60.0505 (12)0.0457 (12)0.0474 (12)0.0001 (10)0.0283 (11)0.0022 (9)
C70.0525 (13)0.0397 (11)0.0467 (12)−0.0004 (9)0.0268 (10)−0.0004 (9)
C80.0548 (13)0.0427 (12)0.0415 (11)−0.0009 (9)0.0270 (10)0.0009 (9)
C90.0759 (16)0.0490 (13)0.0541 (13)−0.0033 (11)0.0418 (13)−0.0016 (10)
C100.0572 (13)0.0459 (13)0.0509 (12)0.0001 (10)0.0318 (11)0.0007 (10)
C110.0874 (19)0.0469 (14)0.0852 (19)−0.0087 (12)0.0561 (16)0.0020 (12)
O1W—H1W0.92 (3)C3—C41.368 (4)
N1—C71.362 (3)C4—C51.363 (3)
N1—C61.409 (3)C4—H4A0.9300
N1—H1A0.88 (3)C5—C61.387 (3)
O1—C71.215 (2)C7—C81.478 (3)
F1—C31.360 (3)C8—C101.363 (3)
C1—C21.384 (3)C8—C91.404 (3)
C1—C61.389 (3)C9—H9A0.9300
C1—H1B0.9300C10—C111.475 (3)
F2—C51.354 (3)C11—H11A0.9600
O2—C101.344 (3)C11—H11B0.9600
O2—N21.406 (3)C11—H11C0.9600
N2—C91.299 (3)C11—H11D0.9600
C2—C31.355 (4)C11—H11E0.9600
C2—H2B0.9300C11—H11F0.9600
C7—N1—C6126.79 (19)C4—C5—C6123.9 (2)
C7—N1—H1A117.3 (16)C5—C6—C1116.6 (2)
C6—N1—H1A115.8 (16)C5—C6—N1117.51 (19)
C2—C1—C6120.6 (2)C1—C6—N1125.85 (19)
C2—C1—H1B119.7O1—C7—N1123.6 (2)
C6—C1—H1B119.7O1—C7—C8121.66 (19)
C10—O2—N2108.88 (17)N1—C7—C8114.70 (18)
C9—N2—O2105.04 (18)C10—C8—C9103.82 (19)
C3—C2—C1119.3 (2)C10—C8—C7125.4 (2)
C3—C2—H2B120.4C9—C8—C7130.7 (2)
C1—C2—H2B120.4N2—C9—C8112.8 (2)
C2—C3—F1119.4 (3)N2—C9—H9A123.6
C2—C3—C4122.8 (2)C8—C9—H9A123.6
F1—C3—C4117.8 (2)O2—C10—C8109.43 (19)
C5—C4—C3116.7 (2)O2—C10—C11116.39 (19)
C5—C4—H4A121.6C8—C10—C11134.2 (2)
C3—C4—H4A121.6H11D—C11—H11E109.5
F2—C5—C4118.5 (2)H11D—C11—H11F109.5
F2—C5—C6117.62 (19)H11E—C11—H11F109.5
C10—O2—N2—C91.0 (3)C6—N1—C7—O1−3.4 (4)
C6—C1—C2—C3−0.2 (4)C6—N1—C7—C8176.0 (2)
C1—C2—C3—F1−179.4 (3)O1—C7—C8—C10−13.8 (3)
C1—C2—C3—C40.3 (5)N1—C7—C8—C10166.8 (2)
C2—C3—C4—C50.6 (4)O1—C7—C8—C9162.3 (2)
F1—C3—C4—C5−179.7 (3)N1—C7—C8—C9−17.1 (3)
C3—C4—C5—F2178.2 (2)O2—N2—C9—C8−0.6 (3)
C3—C4—C5—C6−1.6 (4)C10—C8—C9—N20.0 (3)
F2—C5—C6—C1−178.2 (2)C7—C8—C9—N2−176.8 (2)
C4—C5—C6—C11.6 (4)N2—O2—C10—C8−1.0 (3)
F2—C5—C6—N11.3 (3)N2—O2—C10—C11178.9 (2)
C4—C5—C6—N1−178.9 (2)C9—C8—C10—O20.6 (2)
C2—C1—C6—C5−0.7 (4)C7—C8—C10—O2177.6 (2)
C2—C1—C6—N1179.9 (2)C9—C8—C10—C11−179.2 (3)
C7—N1—C6—C5−169.5 (2)C7—C8—C10—C11−2.2 (4)
C7—N1—C6—C19.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1W0.88 (3)2.26 (3)3.052 (3)150 (2)
O1W—H1W···N2i0.92 (3)2.03 (3)2.934 (2)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1W 0.88 (3)2.26 (3)3.052 (3)150 (2)
O1W—H1W⋯N2i 0.92 (3)2.03 (3)2.934 (2)167 (3)

Symmetry code: (i) .

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