Literature DB >> 22904786

(E)-1-[1-(4-Chloro-phen-yl)ethyl-idene]thio-semicarbazide.

Rafael Mendoza-Meroño1, Santiago García-Granda.   

Abstract

In the crystal structure of the title compound, C(9)H(10)ClN(3)S, the mol-ecules form chains parallel to [001] through N-H⋯S hydrogen bonds. In addition, weak inter-molecular N-H⋯Cl hydrogen bonds connect the chains, forming a two-dimensional network parallel to (001).

Entities:  

Year:  2012        PMID: 22904786      PMCID: PMC3414179          DOI: 10.1107/S1600536812029133

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds and their biological activity, see: Odenike et al. (2008 ▶); Rebolledo et al. (2008 ▶). For a related structure, see: Wang et al. (2007 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C9H10ClN3S M = 227.71 Monoclinic, a = 9.2760 (2) Å b = 13.9990 (3) Å c = 8.3970 (2) Å β = 97.448 (2)° V = 1081.19 (4) Å3 Z = 4 Cu Kα radiation μ = 4.64 mm−1 T = 293 K 0.53 × 0.10 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur (Ruby, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.256, T max = 1.000 6043 measured reflections 2024 independent reflections 1807 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.104 S = 1.06 2024 reflections 167 parameters All H-atom parameters refined Δρmax = 0.31 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SIR2008 (Burla et al., 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PLATON (Spek, 2009 ▶), PARST95 (Nardelli, 1995 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029133/kp2427sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029133/kp2427Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029133/kp2427Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10ClN3SF(000) = 472
Mr = 227.71Dx = 1.399 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
a = 9.2760 (2) ÅCell parameters from 4083 reflections
b = 13.9990 (3) Åθ = 4.8–70.4°
c = 8.3970 (2) ŵ = 4.64 mm1
β = 97.448 (2)°T = 293 K
V = 1081.19 (4) Å3Needle, white
Z = 40.53 × 0.10 × 0.10 mm
Oxford Diffraction Xcalibur (Ruby, Gemini) diffractometer2024 independent reflections
Radiation source: Enhance (Cu) X-ray Source1807 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
Detector resolution: 10.2673 pixels mm-1θmax = 70.6°, θmin = 4.8°
ω scansh = −9→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −16→16
Tmin = 0.256, Tmax = 1.000l = −10→9
6043 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: difference Fourier map
wR(F2) = 0.104All H-atom parameters refined
S = 1.06w = 1/[σ2(Fo2) + (0.0575P)2 + 0.2508P] where P = (Fo2 + 2Fc2)/3
2024 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. Absorption correction: CrysAlisPro, Agilent Technologies, Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET) (compiled Oct 27 2011,15:02:11) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.83335 (6)0.21962 (3)0.00603 (5)0.05163 (19)
Cl10.57019 (7)0.94286 (4)−0.18264 (9)0.0821 (2)
N20.81521 (19)0.39415 (10)−0.11515 (19)0.0491 (4)
N10.77525 (18)0.48923 (10)−0.10634 (18)0.0476 (4)
C90.8022 (2)0.33823 (12)0.0125 (2)0.0432 (4)
N30.7653 (2)0.38062 (13)0.1416 (2)0.0605 (5)
C70.8045 (2)0.54568 (12)−0.2186 (2)0.0438 (4)
C50.8203 (2)0.72184 (13)−0.2668 (3)0.0515 (5)
C40.7665 (2)0.81370 (14)−0.2571 (3)0.0565 (5)
C60.74834 (19)0.64447 (12)−0.2095 (2)0.0424 (4)
C30.6403 (2)0.82766 (12)−0.1920 (2)0.0520 (5)
C10.6206 (2)0.66152 (13)−0.1440 (3)0.0529 (5)
C20.5654 (2)0.75293 (15)−0.1350 (3)0.0587 (5)
C80.8862 (3)0.51830 (16)−0.3537 (3)0.0637 (6)
H50.908 (3)0.7122 (16)−0.314 (3)0.065 (7)*
H40.812 (3)0.8684 (18)−0.300 (3)0.068 (7)*
H10.572 (2)0.6117 (16)−0.111 (3)0.053 (6)*
H20.482 (3)0.7642 (18)−0.088 (3)0.069 (7)*
H90.825 (3)0.3660 (17)−0.208 (3)0.068 (7)*
H10B0.764 (2)0.3508 (19)0.228 (3)0.064 (7)*
H10A0.748 (3)0.4403 (19)0.138 (3)0.061 (6)*
H240.958 (3)0.477 (2)−0.323 (3)0.085 (8)*
H250.913 (4)0.570 (3)−0.406 (4)0.105 (10)*
H230.820 (4)0.488 (3)−0.430 (4)0.115 (12)*
U11U22U33U12U13U23
S10.0813 (4)0.0306 (3)0.0452 (3)0.00960 (19)0.0166 (2)0.00294 (15)
Cl10.0895 (5)0.0360 (3)0.1238 (6)0.0149 (2)0.0247 (4)0.0101 (3)
N20.0750 (11)0.0292 (7)0.0452 (8)0.0056 (7)0.0163 (7)0.0029 (6)
N10.0665 (10)0.0281 (7)0.0493 (8)0.0045 (6)0.0121 (7)0.0020 (6)
C90.0566 (10)0.0317 (8)0.0422 (8)0.0027 (7)0.0100 (7)0.0003 (6)
N30.1046 (15)0.0321 (9)0.0482 (9)0.0092 (8)0.0234 (9)0.0027 (7)
C70.0549 (10)0.0308 (8)0.0459 (9)−0.0027 (7)0.0078 (7)0.0015 (7)
C50.0563 (11)0.0365 (9)0.0636 (12)−0.0035 (8)0.0149 (9)0.0039 (8)
C40.0660 (12)0.0306 (9)0.0740 (13)−0.0058 (8)0.0130 (10)0.0066 (9)
C60.0532 (10)0.0304 (8)0.0434 (8)−0.0021 (7)0.0051 (7)0.0026 (6)
C30.0620 (12)0.0308 (9)0.0622 (11)0.0036 (8)0.0041 (9)0.0034 (8)
C10.0624 (12)0.0332 (9)0.0659 (12)−0.0032 (8)0.0188 (10)0.0078 (8)
C20.0622 (13)0.0427 (11)0.0743 (13)0.0036 (9)0.0203 (11)0.0046 (9)
C80.0942 (18)0.0367 (11)0.0664 (13)0.0043 (11)0.0346 (13)0.0046 (10)
S1—C91.6875 (17)C5—C61.390 (3)
Cl1—C31.7443 (18)C5—H50.96 (2)
N2—C91.345 (2)C4—C31.369 (3)
N2—N11.386 (2)C4—H40.97 (2)
N2—H90.89 (3)C6—C11.390 (3)
N1—C71.286 (2)C3—C21.375 (3)
C9—N31.319 (2)C1—C21.384 (3)
N3—H10B0.84 (3)C1—H10.89 (2)
N3—H10A0.85 (3)C2—H20.93 (3)
C7—C61.483 (2)C8—H240.90 (3)
C7—C81.493 (3)C8—H250.90 (4)
C5—C41.386 (3)C8—H230.93 (4)
C9—N2—N1117.64 (15)C5—C6—C1118.38 (17)
C9—N2—H9118.2 (16)C5—C6—C7121.38 (17)
N1—N2—H9122.1 (16)C1—C6—C7120.23 (16)
C7—N1—N2117.88 (15)C4—C3—C2121.79 (18)
N3—C9—N2116.91 (16)C4—C3—Cl1119.54 (15)
N3—C9—S1122.19 (14)C2—C3—Cl1118.67 (17)
N2—C9—S1120.89 (13)C2—C1—C6121.34 (18)
C9—N3—H10B121.6 (17)C2—C1—H1120.2 (14)
C9—N3—H10A118.9 (16)C6—C1—H1118.5 (14)
H10B—N3—H10A119 (2)C3—C2—C1118.5 (2)
N1—C7—C6115.22 (16)C3—C2—H2120.4 (16)
N1—C7—C8125.12 (17)C1—C2—H2121.0 (16)
C6—C7—C8119.66 (16)C7—C8—H24112.5 (18)
C4—C5—C6120.66 (19)C7—C8—H25111 (2)
C4—C5—H5119.0 (14)H24—C8—H25115 (3)
C6—C5—H5120.3 (14)C7—C8—H23107 (2)
C3—C4—C5119.27 (18)H24—C8—H23107 (3)
C3—C4—H4118.2 (15)H25—C8—H23103 (3)
C5—C4—H4122.5 (15)
C9—N2—N1—C7171.36 (17)N1—C7—C6—C1−30.9 (2)
N1—N2—C9—N3−6.1 (3)C8—C7—C6—C1148.1 (2)
N1—N2—C9—S1174.28 (14)C5—C4—C3—C20.3 (3)
N2—N1—C7—C6175.21 (15)C5—C4—C3—Cl1−178.89 (17)
N2—N1—C7—C8−3.8 (3)C5—C6—C1—C2−0.2 (3)
C6—C5—C4—C3−0.8 (3)C7—C6—C1—C2−179.58 (19)
C4—C5—C6—C10.7 (3)C4—C3—C2—C10.2 (3)
C4—C5—C6—C7−179.92 (18)Cl1—C3—C2—C1179.40 (17)
N1—C7—C6—C5149.71 (19)C6—C1—C2—C3−0.3 (3)
C8—C7—C6—C5−31.3 (3)
D—H···AD—HH···AD···AD—H···A
N2—H9···S1i0.89 (3)2.69 (3)3.581 (2)175 (2)
N3—H10B···S1ii0.84 (3)2.54 (3)3.351 (2)163 (2)
N3—H10A···Cl1iii0.85 (3)2.88 (2)3.500 (2)131 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H9⋯S1i 0.89 (3)2.69 (3)3.581 (2)175 (2)
N3—H10B⋯S1ii 0.84 (3)2.54 (3)3.351 (2)163 (2)
N3—H10A⋯Cl1iii 0.85 (3)2.88 (2)3.500 (2)131 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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