| Literature DB >> 22904784 |
Sharatha Kumar, Sabine Foro, B Thimme Gowda.
Abstract
In the title compound, C(9)H(8)Cl(2)N(2)OS, the conformation of one of the N-H bonds is anti to the C=S group and the other is anti to the C=O group. Further, the conformations of the amide C=S and the C=O group are anti to each other. The 2,6-dichloro-phenyl ring and the 3-acetyl-thio-urea side chain are inclined to one another at a dihedral angle of 83.44 (5)°. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, mol-ecules form inversion dimers through pairs of N-H⋯S hydrogen bonds.Entities:
Year: 2012 PMID: 22904784 PMCID: PMC3414177 DOI: 10.1107/S160053681202925X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8Cl2N2OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2085 reflections | |
| θ = 2.8–27.7° | |
| µ = 0.75 mm−1 | |
| α = 88.05 (1)° | |
| β = 76.39 (1)° | Plate, dark yellow |
| γ = 66.57 (1)° | 0.44 × 0.44 × 0.04 mm |
| Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector | 2232 independent reflections |
| Radiation source: fine-focus sealed tube | 1930 reflections with |
| Graphite monochromator | |
| Rotation method data acquisition using ω and phi scans. | θmax = 26.4°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 3638 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2232 reflections | (Δ/σ)max = 0.005 |
| 143 parameters | Δρmax = 0.30 e Å−3 |
| 3 restraints | Δρmin = −0.37 e Å−3 |
| Experimental. Absorption correction: CrysAlis RED (Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.0838 (3) | 0.5813 (3) | 0.14414 (19) | 0.0322 (4) | |
| C2 | 0.2043 (3) | 0.5857 (3) | 0.0189 (2) | 0.0359 (5) | |
| C3 | 0.3407 (3) | 0.4272 (3) | −0.0553 (2) | 0.0447 (6) | |
| H3 | 0.4218 | 0.4319 | −0.1389 | 0.054* | |
| C4 | 0.3548 (3) | 0.2629 (3) | −0.0042 (3) | 0.0488 (6) | |
| H4 | 0.4466 | 0.1563 | −0.0537 | 0.059* | |
| C5 | 0.2355 (4) | 0.2534 (3) | 0.1192 (3) | 0.0465 (6) | |
| H5 | 0.2449 | 0.1416 | 0.1525 | 0.056* | |
| C6 | 0.1012 (3) | 0.4131 (3) | 0.1927 (2) | 0.0374 (5) | |
| C7 | −0.0252 (3) | 0.8408 (3) | 0.30587 (19) | 0.0300 (4) | |
| C8 | −0.3676 (3) | 1.0659 (3) | 0.3506 (2) | 0.0356 (5) | |
| C9 | −0.4980 (3) | 1.2494 (3) | 0.4221 (3) | 0.0524 (6) | |
| H9A | −0.4576 | 1.3397 | 0.3769 | 0.079* | |
| H9B | −0.4901 | 1.2490 | 0.5164 | 0.079* | |
| H9C | −0.6296 | 1.2768 | 0.4187 | 0.079* | |
| N1 | −0.0603 (2) | 0.7439 (2) | 0.21891 (17) | 0.0342 (4) | |
| H1N | −0.175 (3) | 0.782 (3) | 0.210 (2) | 0.041* | |
| N2 | −0.1818 (2) | 0.9960 (2) | 0.36945 (17) | 0.0349 (4) | |
| H2N | −0.156 (3) | 1.053 (3) | 0.426 (2) | 0.042* | |
| O1 | −0.4216 (2) | 0.9862 (2) | 0.28007 (18) | 0.0530 (5) | |
| Cl1 | 0.18527 (10) | 0.79226 (8) | −0.04530 (6) | 0.05449 (19) | |
| Cl2 | −0.04629 (11) | 0.40151 (9) | 0.34891 (6) | 0.0607 (2) | |
| S1 | 0.19132 (8) | 0.78798 (8) | 0.33840 (6) | 0.04599 (18) |
| C1 | 0.0283 (9) | 0.0309 (10) | 0.0335 (10) | −0.0061 (8) | −0.0087 (8) | −0.0104 (8) |
| C2 | 0.0328 (10) | 0.0362 (11) | 0.0355 (10) | −0.0091 (9) | −0.0099 (8) | −0.0045 (8) |
| C3 | 0.0327 (11) | 0.0510 (14) | 0.0374 (11) | −0.0048 (10) | −0.0038 (9) | −0.0144 (10) |
| C4 | 0.0393 (12) | 0.0385 (13) | 0.0534 (14) | 0.0040 (10) | −0.0152 (11) | −0.0198 (11) |
| C5 | 0.0501 (13) | 0.0290 (11) | 0.0562 (14) | −0.0061 (10) | −0.0214 (11) | −0.0052 (10) |
| C6 | 0.0375 (11) | 0.0367 (11) | 0.0378 (11) | −0.0129 (9) | −0.0110 (9) | −0.0062 (9) |
| C7 | 0.0291 (8) | 0.0289 (10) | 0.0276 (9) | −0.0089 (8) | −0.0025 (7) | −0.0048 (8) |
| C8 | 0.0324 (10) | 0.0336 (11) | 0.0340 (10) | −0.0077 (9) | −0.0045 (8) | −0.0046 (8) |
| C9 | 0.0411 (13) | 0.0410 (13) | 0.0574 (15) | 0.0012 (10) | −0.0084 (11) | −0.0153 (11) |
| N1 | 0.0258 (8) | 0.0321 (9) | 0.0393 (9) | −0.0054 (7) | −0.0070 (7) | −0.0125 (7) |
| N2 | 0.0315 (9) | 0.0324 (9) | 0.0353 (9) | −0.0067 (7) | −0.0066 (7) | −0.0131 (7) |
| O1 | 0.0351 (8) | 0.0514 (10) | 0.0654 (11) | −0.0058 (7) | −0.0162 (8) | −0.0201 (8) |
| Cl1 | 0.0596 (4) | 0.0476 (4) | 0.0521 (4) | −0.0206 (3) | −0.0080 (3) | 0.0075 (3) |
| Cl2 | 0.0744 (5) | 0.0573 (4) | 0.0485 (4) | −0.0325 (3) | −0.0004 (3) | 0.0009 (3) |
| S1 | 0.0299 (3) | 0.0539 (4) | 0.0455 (3) | −0.0060 (2) | −0.0090 (2) | −0.0226 (3) |
| C1—C2 | 1.384 (3) | C7—N1 | 1.329 (2) |
| C1—C6 | 1.388 (3) | C7—N2 | 1.385 (2) |
| C1—N1 | 1.424 (2) | C7—S1 | 1.664 (2) |
| C2—C3 | 1.384 (3) | C8—O1 | 1.211 (2) |
| C2—Cl1 | 1.725 (2) | C8—N2 | 1.376 (3) |
| C3—C4 | 1.374 (4) | C8—C9 | 1.503 (3) |
| C3—H3 | 0.9300 | C9—H9A | 0.9600 |
| C4—C5 | 1.377 (4) | C9—H9B | 0.9600 |
| C4—H4 | 0.9300 | C9—H9C | 0.9600 |
| C5—C6 | 1.384 (3) | N1—H1N | 0.836 (16) |
| C5—H5 | 0.9300 | N2—H2N | 0.845 (16) |
| C6—Cl2 | 1.730 (2) | ||
| C2—C1—C6 | 118.15 (18) | N1—C7—N2 | 115.94 (17) |
| C2—C1—N1 | 121.29 (19) | N1—C7—S1 | 124.10 (15) |
| C6—C1—N1 | 120.50 (18) | N2—C7—S1 | 119.95 (14) |
| C1—C2—C3 | 121.2 (2) | O1—C8—N2 | 122.41 (18) |
| C1—C2—Cl1 | 119.41 (15) | O1—C8—C9 | 122.4 (2) |
| C3—C2—Cl1 | 119.43 (18) | N2—C8—C9 | 115.21 (18) |
| C4—C3—C2 | 119.3 (2) | C8—C9—H9A | 109.5 |
| C4—C3—H3 | 120.4 | C8—C9—H9B | 109.5 |
| C2—C3—H3 | 120.4 | H9A—C9—H9B | 109.5 |
| C3—C4—C5 | 121.1 (2) | C8—C9—H9C | 109.5 |
| C3—C4—H4 | 119.4 | H9A—C9—H9C | 109.5 |
| C5—C4—H4 | 119.4 | H9B—C9—H9C | 109.5 |
| C4—C5—C6 | 118.8 (2) | C7—N1—C1 | 123.48 (17) |
| C4—C5—H5 | 120.6 | C7—N1—H1N | 116.3 (16) |
| C6—C5—H5 | 120.6 | C1—N1—H1N | 120.3 (16) |
| C5—C6—C1 | 121.4 (2) | C8—N2—C7 | 128.23 (17) |
| C5—C6—Cl2 | 118.92 (18) | C8—N2—H2N | 117.7 (16) |
| C1—C6—Cl2 | 119.64 (15) | C7—N2—H2N | 114.0 (16) |
| C6—C1—C2—C3 | −1.0 (3) | N1—C1—C6—C5 | 177.63 (19) |
| N1—C1—C2—C3 | −178.23 (18) | C2—C1—C6—Cl2 | 179.87 (15) |
| C6—C1—C2—Cl1 | 179.45 (15) | N1—C1—C6—Cl2 | −2.8 (3) |
| N1—C1—C2—Cl1 | 2.2 (3) | N2—C7—N1—C1 | 179.64 (19) |
| C1—C2—C3—C4 | 0.7 (3) | S1—C7—N1—C1 | 0.7 (3) |
| Cl1—C2—C3—C4 | −179.70 (17) | C2—C1—N1—C7 | −86.2 (3) |
| C2—C3—C4—C5 | 0.2 (3) | C6—C1—N1—C7 | 96.6 (2) |
| C3—C4—C5—C6 | −0.8 (3) | O1—C8—N2—C7 | 6.5 (4) |
| C4—C5—C6—C1 | 0.5 (3) | C9—C8—N2—C7 | −172.7 (2) |
| C4—C5—C6—Cl2 | −179.01 (17) | N1—C7—N2—C8 | −2.4 (3) |
| C2—C1—C6—C5 | 0.3 (3) | S1—C7—N2—C8 | 176.56 (17) |
| H··· | ||||
| N1—H1 | 0.84 (2) | 1.94 (2) | 2.631 (2) | 139 (2) |
| N2—H2 | 0.85 (2) | 2.63 (2) | 3.4252 (17) | 158 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.84 (2) | 1.94 (2) | 2.631 (2) | 139 (2) |
| N2—H2 | 0.85 (2) | 2.63 (2) | 3.4252 (17) | 158 (2) |
Symmetry code: (i) .