Literature DB >> 22904763

Aqua-[2,2'-(propane-1,3-di-yl)bis-(5-car-boxy-1H-imidazole-4-carboxyl-ato)-κ(4)N(3),O(4):N(3'),O(4')](pyridine-κN)cobalt(II)-4,4'-bipyridine (1/1).

Wei Liu1, Xia Li.   

Abstract

In the title compound, [Co(C(13)H(10)N(4)O(8))(C(5)H(5)N)(H(2)O)]·C(10)H(8)N(2), the asymmetric unit comprises half a Co(II) complex located on a mirror plane and half a cocrystallized mol-ecule of 4,4'-bipyridine located on an inversion center. The Co(II) ion is six coordinate, with distorted octa-hedral geometry, ligated by two N atoms and two O atoms from a 2,2'-(propane-1,3-di-yl)bis-(5-carboxy-1H-imidazole-4-carboxyl-ate) dianion, one N atom from a pyridine mol-ecule and one coordinating water mol-ecule. The Co-O bond lengths range from 2.076 (2) to 2.1441 (15) Å, while the Co-N bond lengths are 2.138 (3) and 2.1515 (17) Å. A two-dimensional network of N-H⋯O and O-H⋯N hydrogen bonds stabilizes the crystal packing. There are π-π inter-actions between the bipyridine and imidazole rings [centroid-centroid distance = 3.7694 (4) Å]. The propane-1,3-diyl group is disordered over two conformations, with refined occupancies of 0.755 (8) and 0.245 (8).

Entities:  

Year:  2012        PMID: 22904763      PMCID: PMC3414156          DOI: 10.1107/S1600536812029856

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For complexes based on substituted 4,5-imidazole­dicarb­oxy­lic acids, see: Zhu et al. (2010 ▶, 2011 ▶); Lu et al. (2010 ▶); Song et al. (2010 ▶); Zhang et al. (2010 ▶); Wang et al. (2008 ▶); Feng et al. (2010 ▶); Liu et al. (2010 ▶); Zheng et al. (2011 ▶); Li et al. (2009 ▶, 2010 ▶).

Experimental

Crystal data

[Co(C13H10N4O8)(C5H5N)(H2O)C10H8N2 M = 661.47 Monoclinic, a = 7.9733 (10) Å b = 20.738 (3) Å c = 8.2987 (11) Å β = 91.350 (2)° V = 1371.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.70 mm−1 T = 296 K 0.22 × 0.18 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.862, T max = 0.927 11480 measured reflections 3443 independent reflections 2633 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.105 S = 1.05 3443 reflections 219 parameters 1 restraint H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029856/pk2422sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029856/pk2422Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C13H10N4O8)(C5H5N)(H2O)]·C10H8N2F(000) = 680
Mr = 661.47Dx = 1.601 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 2701 reflections
a = 7.9733 (10) Åθ = 2.6–28.3°
b = 20.738 (3) ŵ = 0.70 mm1
c = 8.2987 (11) ÅT = 296 K
β = 91.350 (2)°Prismatic, red
V = 1371.8 (3) Å30.22 × 0.18 × 0.11 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3443 independent reflections
Radiation source: fine-focus sealed tube2633 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −10→10
Tmin = 0.862, Tmax = 0.927k = −27→27
11480 measured reflectionsl = −11→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0442P)2 + 0.5516P] where P = (Fo2 + 2Fc2)/3
3443 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.43 e Å3
1 restraintΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co11.06603 (5)0.25000.45178 (5)0.03122 (13)
O11.1510 (2)0.32701 (7)0.60553 (18)0.0383 (4)
O21.2252 (2)0.43073 (8)0.6011 (2)0.0522 (5)
O31.2037 (3)0.52310 (8)0.4133 (2)0.0529 (5)
H31.21280.49180.47340.079*
O41.1130 (3)0.54174 (8)0.1645 (2)0.0529 (5)
O51.3034 (3)0.25000.3543 (3)0.0427 (6)
H1W1.32940.21300.33010.064*0.50
N11.0110 (2)0.33325 (8)0.3051 (2)0.0333 (4)
N20.9918 (2)0.41425 (8)0.1356 (2)0.0376 (4)
H20.96800.43580.04940.045*
N30.8291 (3)0.25000.5671 (3)0.0362 (6)
N40.5482 (3)0.64535 (11)0.7813 (3)0.0581 (6)
C11.0812 (3)0.38718 (10)0.3751 (3)0.0323 (5)
C21.0707 (3)0.43808 (10)0.2707 (3)0.0339 (5)
C30.9574 (3)0.35140 (10)0.1597 (3)0.0391 (5)
C41.1577 (3)0.38108 (10)0.5396 (3)0.0352 (5)
C51.1307 (3)0.50565 (11)0.2790 (3)0.0389 (5)
C60.8845 (10)0.3117 (3)0.0277 (8)0.077 (2)0.755 (8)
H6A0.97360.2990−0.04320.092*0.755 (8)
H6B0.80600.3380−0.03470.092*0.755 (8)
C70.7919 (6)0.25000.0846 (6)0.0417 (13)0.755 (8)
H7A0.67790.25000.04110.050*0.755 (8)
H7B0.78670.25000.20120.050*0.755 (8)
C80.7494 (3)0.30506 (12)0.6012 (3)0.0432 (6)
H80.80320.34390.58070.052*
C90.5915 (3)0.30676 (14)0.6651 (3)0.0531 (7)
H90.54040.34600.68690.064*
C100.5108 (5)0.25000.6959 (5)0.0564 (10)
H100.40330.25000.73710.068*
C110.6117 (4)0.63819 (13)0.9295 (4)0.0565 (7)
H110.67010.67270.97510.068*
C120.5967 (3)0.58259 (12)1.0209 (3)0.0467 (6)
H120.64420.58021.12410.056*
C130.5101 (3)0.53088 (11)0.9558 (3)0.0378 (5)
C140.4429 (4)0.53878 (13)0.8010 (4)0.0604 (8)
H140.38290.50540.75200.072*
C150.4649 (4)0.59541 (15)0.7211 (4)0.0681 (9)
H150.41830.59920.61770.082*
C7'0.9726 (4)0.25000 (15)−0.0032 (4)0.048 (4)*0.245 (8)
H7'10.99620.2500−0.11730.057*0.245 (8)
H7'21.07620.25000.06040.057*0.245 (8)
C6'0.841 (2)0.3086 (7)0.049 (2)0.034 (3)*0.245 (8)
H6'10.80010.3323−0.04460.041*0.245 (8)
H6'20.74700.29170.10740.041*0.245 (8)
U11U22U33U12U13U23
Co10.0391 (2)0.0229 (2)0.0313 (2)0.000−0.00719 (16)0.000
O10.0514 (10)0.0286 (8)0.0344 (9)−0.0005 (7)−0.0105 (7)−0.0007 (7)
O20.0784 (13)0.0338 (9)0.0434 (10)−0.0142 (8)−0.0229 (9)−0.0026 (7)
O30.0842 (14)0.0277 (9)0.0458 (11)−0.0100 (8)−0.0171 (9)−0.0005 (7)
O40.0819 (13)0.0294 (9)0.0466 (11)−0.0079 (8)−0.0133 (9)0.0070 (8)
O50.0451 (13)0.0284 (11)0.0549 (15)0.0000.0038 (11)0.000
N10.0417 (10)0.0235 (8)0.0342 (10)−0.0004 (7)−0.0091 (8)−0.0011 (7)
N20.0518 (11)0.0257 (9)0.0349 (10)−0.0025 (8)−0.0109 (8)0.0041 (8)
N30.0409 (15)0.0319 (14)0.0356 (15)0.000−0.0052 (11)0.000
N40.0629 (15)0.0422 (13)0.0696 (17)0.0037 (11)0.0090 (12)0.0145 (11)
C10.0381 (11)0.0237 (10)0.0349 (12)0.0008 (9)−0.0056 (9)−0.0030 (8)
C20.0414 (12)0.0268 (10)0.0333 (12)0.0016 (9)−0.0040 (9)−0.0017 (9)
C30.0533 (14)0.0280 (11)0.0354 (13)−0.0024 (10)−0.0111 (10)0.0007 (9)
C40.0427 (12)0.0288 (11)0.0336 (12)0.0000 (9)−0.0074 (9)−0.0031 (9)
C50.0497 (14)0.0275 (11)0.0394 (13)−0.0007 (10)−0.0042 (10)−0.0029 (10)
C60.127 (6)0.053 (3)0.049 (3)−0.053 (3)−0.024 (4)0.005 (2)
C70.049 (3)0.033 (2)0.042 (3)0.000−0.020 (2)0.000
C80.0486 (14)0.0405 (13)0.0402 (14)0.0048 (11)−0.0044 (10)0.0007 (11)
C90.0528 (16)0.0609 (18)0.0456 (15)0.0178 (13)−0.0006 (12)0.0010 (13)
C100.043 (2)0.084 (3)0.042 (2)0.000−0.0003 (16)0.000
C110.0655 (18)0.0355 (14)0.069 (2)−0.0091 (12)0.0129 (15)−0.0069 (13)
C120.0578 (16)0.0388 (13)0.0433 (14)−0.0068 (11)0.0000 (11)−0.0039 (11)
C130.0384 (12)0.0330 (12)0.0419 (13)−0.0018 (9)−0.0019 (10)0.0015 (10)
C140.076 (2)0.0456 (15)0.0580 (18)−0.0175 (14)−0.0252 (15)0.0147 (13)
C150.083 (2)0.0592 (19)0.061 (2)−0.0065 (16)−0.0203 (16)0.0207 (16)
Co1—O52.076 (2)C6—H6A0.9700
Co1—N32.138 (3)C6—H6B0.9700
Co1—O12.1441 (15)C7—C6i1.557 (6)
Co1—O1i2.1441 (15)C7—H7A0.9700
Co1—N1i2.1515 (17)C7—H7B0.9700
Co1—N12.1515 (17)C8—C91.378 (4)
O1—C41.249 (3)C8—H80.9300
O2—C41.264 (3)C9—C101.369 (3)
O3—C51.297 (3)C9—H90.9300
O3—H30.8200C10—C9i1.369 (3)
O4—C51.215 (3)C10—H100.9300
O5—H1W0.8200C11—C121.387 (4)
N1—C31.326 (3)C11—H110.9300
N1—C11.374 (3)C12—C131.378 (3)
N2—C31.348 (3)C12—H120.9300
N2—C21.366 (3)C13—C141.390 (3)
N2—H20.8600C13—C13ii1.486 (4)
N3—C81.340 (3)C14—C151.362 (4)
N3—C8i1.340 (3)C14—H140.9300
N4—C151.322 (4)C15—H150.9300
N4—C111.327 (4)C7'—C6'i1.667 (13)
C1—C21.367 (3)C7'—C6'1.667 (13)
C1—C41.487 (3)C7'—H7'10.9700
C2—C51.482 (3)C7'—H7'20.9700
C3—C61.478 (6)C6'—H6'10.9700
C3—C6'1.565 (19)C6'—H6'20.9700
C6—C71.557 (6)
O5—Co1—N3176.35 (10)C3—C6—H6A108.6
O5—Co1—O187.35 (7)C7—C6—H6A108.6
N3—Co1—O190.22 (7)C3—C6—H6B108.6
O5—Co1—O1i87.35 (7)C7—C6—H6B108.6
N3—Co1—O1i90.22 (7)H6A—C6—H6B107.6
O1—Co1—O1i96.30 (8)C6—C7—C6i110.7 (7)
O5—Co1—N1i87.43 (7)C6—C7—H7A109.5
N3—Co1—N1i94.74 (7)C6i—C7—H7A109.5
O1—Co1—N1i172.62 (6)C6—C7—H7B109.5
O1i—Co1—N1i78.25 (6)C6i—C7—H7B109.5
O5—Co1—N187.43 (7)H7A—C7—H7B108.1
N3—Co1—N194.74 (7)N3—C8—C9123.0 (2)
O1—Co1—N178.25 (6)N3—C8—H8118.5
O1i—Co1—N1172.62 (6)C9—C8—H8118.5
N1i—Co1—N1106.72 (9)C10—C9—C8119.2 (3)
C4—O1—Co1115.09 (14)C10—C9—H9120.4
C5—O3—H3109.5C8—C9—H9120.4
Co1—O5—H1W109.5C9—C10—C9i118.7 (4)
C3—N1—C1105.87 (18)C9—C10—H10120.7
C3—N1—Co1143.14 (15)C9i—C10—H10120.7
C1—N1—Co1109.78 (13)N4—C11—C12124.3 (3)
C3—N2—C2108.63 (18)N4—C11—H11117.8
C3—N2—H2125.7C12—C11—H11117.8
C2—N2—H2125.7C13—C12—C11118.8 (3)
C8—N3—C8i116.9 (3)C13—C12—H12120.6
C8—N3—Co1121.51 (15)C11—C12—H12120.6
C8i—N3—Co1121.51 (15)C12—C13—C14116.7 (2)
C15—N4—C11116.1 (2)C12—C13—C13ii122.5 (3)
C2—C1—N1110.02 (19)C14—C13—C13ii120.9 (3)
C2—C1—C4131.70 (19)C15—C14—C13120.0 (3)
N1—C1—C4118.24 (18)C15—C14—H14120.0
N2—C2—C1105.15 (18)C13—C14—H14120.0
N2—C2—C5121.5 (2)N4—C15—C14124.1 (3)
C1—C2—C5133.3 (2)N4—C15—H15118.0
N1—C3—N2110.33 (19)C14—C15—H15118.0
N1—C3—C6129.0 (3)C6'i—C7'—C6'93.5 (12)
N2—C3—C6120.4 (3)C6'i—C7'—H7'1113.0
N1—C3—C6'123.2 (7)C6'—C7'—H7'1113.0
N2—C3—C6'125.5 (6)C6'i—C7'—H7'2113.0
C6—C3—C6'14.6 (7)C6'—C7'—H7'2113.0
O1—C4—O2125.2 (2)H7'1—C7'—H7'2110.4
O1—C4—C1117.23 (18)C3—C6'—C7'101.5 (9)
O2—C4—C1117.59 (19)C3—C6'—H6'1111.5
O4—C5—O3122.8 (2)C7'—C6'—H6'1111.5
O4—C5—C2121.0 (2)C3—C6'—H6'2111.5
O3—C5—C2116.2 (2)C7'—C6'—H6'2111.5
C3—C6—C7114.5 (5)H6'1—C6'—H6'2109.3
O5—Co1—O1—C477.25 (17)C1—N1—C3—C6174.5 (5)
N3—Co1—O1—C4−105.47 (17)Co1—N1—C3—C69.5 (6)
O1i—Co1—O1—C4164.28 (13)C1—N1—C3—C6'−169.0 (6)
N1i—Co1—O1—C4122.3 (5)Co1—N1—C3—C6'26.1 (7)
N1—Co1—O1—C4−10.68 (16)C2—N2—C3—N1−0.1 (3)
O5—Co1—N1—C386.0 (3)C2—N2—C3—C6−174.9 (4)
N3—Co1—N1—C3−96.9 (3)C2—N2—C3—C6'168.9 (7)
O1—Co1—N1—C3173.8 (3)Co1—O1—C4—O2−169.8 (2)
O1i—Co1—N1—C3131.0 (5)Co1—O1—C4—C19.7 (3)
N1i—Co1—N1—C3−0.5 (3)C2—C1—C4—O1−178.4 (2)
O5—Co1—N1—C1−78.58 (15)N1—C1—C4—O1−1.1 (3)
N3—Co1—N1—C198.49 (15)C2—C1—C4—O21.1 (4)
O1—Co1—N1—C19.25 (14)N1—C1—C4—O2178.5 (2)
O1i—Co1—N1—C1−33.6 (6)N2—C2—C5—O4−0.9 (4)
N1i—Co1—N1—C1−165.12 (11)C1—C2—C5—O4176.1 (2)
O5—Co1—N3—C891.7 (2)N2—C2—C5—O3180.0 (2)
O1—Co1—N3—C843.6 (2)C1—C2—C5—O3−3.1 (4)
O1i—Co1—N3—C8139.9 (2)N1—C3—C6—C727.9 (8)
N1i—Co1—N3—C8−141.9 (2)N2—C3—C6—C7−158.5 (4)
N1—Co1—N3—C8−34.6 (2)C6'—C3—C6—C7−44 (3)
O5—Co1—N3—C8i−91.7 (2)C3—C6—C7—C6i−114.7 (5)
O1—Co1—N3—C8i−139.9 (2)C8i—N3—C8—C9−1.4 (5)
O1i—Co1—N3—C8i−43.6 (2)Co1—N3—C8—C9175.34 (19)
N1i—Co1—N3—C8i34.6 (2)N3—C8—C9—C100.1 (4)
N1—Co1—N3—C8i141.9 (2)C8—C9—C10—C9i1.3 (5)
C3—N1—C1—C2−0.4 (3)C15—N4—C11—C120.6 (4)
Co1—N1—C1—C2170.09 (15)N4—C11—C12—C13−0.2 (4)
C3—N1—C1—C4−178.2 (2)C11—C12—C13—C14−0.2 (4)
Co1—N1—C1—C4−7.8 (2)C11—C12—C13—C13ii179.1 (3)
C3—N2—C2—C1−0.1 (3)C12—C13—C14—C150.3 (4)
C3—N2—C2—C5177.6 (2)C13ii—C13—C14—C15−179.0 (3)
N1—C1—C2—N20.3 (2)C11—N4—C15—C14−0.4 (5)
C4—C1—C2—N2177.8 (2)C13—C14—C15—N40.0 (5)
N1—C1—C2—C5−177.0 (2)N1—C3—C6'—C7'−70.7 (10)
C4—C1—C2—C50.5 (4)N2—C3—C6'—C7'121.7 (6)
C1—N1—C3—N20.3 (3)C6—C3—C6'—C7'48 (2)
Co1—N1—C3—N2−164.64 (19)C6'i—C7'—C6'—C3129.0 (6)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.821.652.473 (2)177
O5—H1W···N4iii0.821.952.727 (3)157
N2—H2···O4iv0.861.932.763 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O20.821.652.473 (2)177
O5—H1W⋯N4i 0.821.952.727 (3)157
N2—H2⋯O4ii 0.861.932.763 (3)162

Symmetry codes: (i) ; (ii) .

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