| Literature DB >> 22904745 |
Sadif A Shirvan1, Sara Haydari Dezfuli.
Abstract
In the title mol-ecule, [Cd(CH(3)COO)(2)(C(6)H(6)N(2)O)(2)], the Cd(II) cation is N,N'-chelated by two 2-pyridine-aldoxime ligands and coordinated by two acetate anions in a distorted octa-hedral geometry. The hy-droxy groups of the 2-pyridine-aldoxime ligands link to the acetate anions via intra-molecular O-H⋯O hydrogen bonds. Weak inter-molecular C-H⋯O hydrogen bonds occur in the crystal.Entities:
Year: 2012 PMID: 22904745 PMCID: PMC3414138 DOI: 10.1107/S1600536812031819
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C2H3O2)2(C6H6N2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 8165 reflections | |
| θ = 1.5–26.0° | |
| µ = 1.18 mm−1 | |
| α = 100.837 (6)° | |
| β = 97.994 (6)° | Prism, colorless |
| γ = 114.700 (5)° | 0.48 × 0.38 × 0.30 mm |
| Bruker APEXII CCD area-detector diffractometer | 3758 independent reflections |
| Radiation source: fine-focus sealed tube | 3236 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 8165 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3758 reflections | (Δ/σ)max = 0.010 |
| 252 parameters | Δρmax = 0.64 e Å−3 |
| 2 restraints | Δρmin = −0.96 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.8192 (5) | 0.7991 (5) | 0.9158 (3) | 0.0581 (9) | |
| H1 | 0.8759 | 0.8033 | 0.8639 | 0.070* | |
| C2 | 0.8947 (6) | 0.7893 (6) | 1.0068 (3) | 0.0722 (12) | |
| H2 | 0.9992 | 0.7843 | 1.0152 | 0.087* | |
| C3 | 0.8151 (6) | 0.7869 (7) | 1.0838 (4) | 0.0845 (14) | |
| H3 | 0.8653 | 0.7822 | 1.1460 | 0.101* | |
| C4 | 0.6590 (6) | 0.7916 (7) | 1.0692 (3) | 0.0781 (13) | |
| H4 | 0.6029 | 0.7915 | 1.1213 | 0.094* | |
| C5 | 0.5877 (5) | 0.7965 (5) | 0.9757 (3) | 0.0570 (9) | |
| C6 | 0.4177 (5) | 0.7942 (5) | 0.9549 (3) | 0.0601 (9) | |
| H6A | 0.3628 | 0.8031 | 1.0067 | 0.072* | |
| C7 | 0.3108 (5) | 0.3972 (5) | 0.6895 (3) | 0.0564 (9) | |
| H7 | 0.2298 | 0.4142 | 0.7203 | 0.068* | |
| C8 | 0.2865 (6) | 0.2340 (5) | 0.6552 (3) | 0.0672 (11) | |
| H8 | 0.1925 | 0.1439 | 0.6637 | 0.081* | |
| C9 | 0.4040 (6) | 0.2086 (5) | 0.6088 (4) | 0.0731 (12) | |
| H9 | 0.3917 | 0.1006 | 0.5853 | 0.088* | |
| C10 | 0.5391 (6) | 0.3433 (5) | 0.5972 (3) | 0.0686 (11) | |
| H10 | 0.6188 | 0.3277 | 0.5643 | 0.082* | |
| C11 | 0.5577 (4) | 0.5027 (5) | 0.6342 (3) | 0.0508 (8) | |
| C12 | 0.7043 (5) | 0.6520 (5) | 0.6258 (3) | 0.0649 (11) | |
| H12A | 0.7859 | 0.6391 | 0.5939 | 0.078* | |
| C13 | 0.8125 (7) | 1.3947 (5) | 0.8418 (4) | 0.0858 (14) | |
| H13A | 0.8408 | 1.4150 | 0.9139 | 0.103* | |
| H13B | 0.7162 | 1.4160 | 0.8218 | 0.103* | |
| H13C | 0.9102 | 1.4682 | 0.8214 | 0.103* | |
| C14 | 0.7660 (5) | 1.2150 (5) | 0.7920 (3) | 0.0560 (9) | |
| C15 | 0.0811 (5) | 0.7410 (6) | 0.4978 (3) | 0.0698 (11) | |
| H15A | 0.1029 | 0.6727 | 0.4453 | 0.084* | |
| H15B | 0.1167 | 0.8513 | 0.4882 | 0.084* | |
| H15C | −0.0400 | 0.6904 | 0.4955 | 0.084* | |
| C16 | 0.1808 (5) | 0.7544 (5) | 0.5986 (3) | 0.0540 (9) | |
| N1 | 0.6675 (4) | 0.8026 (4) | 0.8998 (2) | 0.0509 (7) | |
| N2 | 0.3474 (4) | 0.7801 (4) | 0.8656 (2) | 0.0520 (7) | |
| N3 | 0.4438 (3) | 0.5309 (3) | 0.6806 (2) | 0.0459 (6) | |
| N4 | 0.7206 (4) | 0.7966 (4) | 0.6613 (2) | 0.0519 (7) | |
| O1 | 0.1873 (4) | 0.7749 (5) | 0.8529 (2) | 0.0717 (8) | |
| H1B | 0.159 (5) | 0.763 (5) | 0.7912 (10) | 0.058 (12)* | |
| O2 | 0.8603 (4) | 0.9252 (4) | 0.6470 (3) | 0.0863 (10) | |
| H2B | 0.864 (7) | 1.016 (4) | 0.675 (4) | 0.11 (2)* | |
| O3 | 0.6409 (4) | 1.1036 (3) | 0.8110 (2) | 0.0700 (8) | |
| O4 | 0.8568 (4) | 1.1901 (4) | 0.7372 (3) | 0.0850 (9) | |
| O5 | 0.3410 (3) | 0.8162 (4) | 0.6126 (2) | 0.0682 (7) | |
| O6 | 0.0997 (4) | 0.7014 (5) | 0.6609 (2) | 0.0892 (10) | |
| Cd1 | 0.51653 (3) | 0.82333 (3) | 0.745759 (18) | 0.04330 (10) |
| C1 | 0.062 (2) | 0.063 (2) | 0.051 (2) | 0.0298 (19) | 0.0140 (17) | 0.0144 (18) |
| C2 | 0.072 (3) | 0.082 (3) | 0.066 (3) | 0.042 (2) | 0.006 (2) | 0.019 (2) |
| C3 | 0.088 (3) | 0.109 (4) | 0.055 (3) | 0.044 (3) | 0.002 (2) | 0.032 (3) |
| C4 | 0.087 (3) | 0.106 (4) | 0.045 (2) | 0.045 (3) | 0.015 (2) | 0.026 (2) |
| C5 | 0.064 (2) | 0.061 (2) | 0.0416 (19) | 0.0260 (18) | 0.0115 (16) | 0.0115 (17) |
| C6 | 0.066 (2) | 0.073 (3) | 0.046 (2) | 0.032 (2) | 0.0223 (17) | 0.0176 (18) |
| C7 | 0.0511 (19) | 0.058 (2) | 0.054 (2) | 0.0191 (17) | 0.0148 (16) | 0.0152 (18) |
| C8 | 0.069 (2) | 0.054 (2) | 0.064 (3) | 0.0150 (19) | 0.012 (2) | 0.019 (2) |
| C9 | 0.088 (3) | 0.048 (2) | 0.077 (3) | 0.030 (2) | 0.012 (2) | 0.013 (2) |
| C10 | 0.076 (3) | 0.062 (2) | 0.074 (3) | 0.040 (2) | 0.023 (2) | 0.009 (2) |
| C11 | 0.0512 (18) | 0.055 (2) | 0.0488 (19) | 0.0270 (16) | 0.0140 (15) | 0.0122 (16) |
| C12 | 0.060 (2) | 0.071 (3) | 0.074 (3) | 0.034 (2) | 0.036 (2) | 0.018 (2) |
| C13 | 0.098 (3) | 0.047 (2) | 0.095 (4) | 0.020 (2) | 0.022 (3) | 0.010 (2) |
| C14 | 0.065 (2) | 0.053 (2) | 0.045 (2) | 0.0239 (18) | 0.0067 (17) | 0.0140 (17) |
| C15 | 0.062 (2) | 0.092 (3) | 0.059 (2) | 0.038 (2) | 0.0087 (19) | 0.024 (2) |
| C16 | 0.051 (2) | 0.055 (2) | 0.057 (2) | 0.0275 (17) | 0.0068 (16) | 0.0141 (17) |
| N1 | 0.0543 (16) | 0.0539 (17) | 0.0436 (16) | 0.0251 (14) | 0.0106 (13) | 0.0112 (13) |
| N2 | 0.0485 (15) | 0.0629 (19) | 0.0475 (17) | 0.0252 (14) | 0.0201 (13) | 0.0163 (14) |
| N3 | 0.0439 (14) | 0.0479 (16) | 0.0434 (15) | 0.0199 (12) | 0.0110 (11) | 0.0097 (12) |
| N4 | 0.0469 (15) | 0.0542 (17) | 0.0562 (17) | 0.0202 (13) | 0.0243 (13) | 0.0174 (14) |
| O1 | 0.0535 (15) | 0.110 (2) | 0.0619 (19) | 0.0426 (16) | 0.0251 (13) | 0.0259 (18) |
| O2 | 0.0739 (19) | 0.064 (2) | 0.123 (3) | 0.0204 (16) | 0.064 (2) | 0.026 (2) |
| O3 | 0.0821 (19) | 0.0466 (15) | 0.0721 (18) | 0.0207 (14) | 0.0283 (15) | 0.0095 (14) |
| O4 | 0.094 (2) | 0.0665 (19) | 0.092 (2) | 0.0296 (17) | 0.0422 (19) | 0.0197 (18) |
| O5 | 0.0527 (15) | 0.088 (2) | 0.0659 (18) | 0.0314 (14) | 0.0095 (12) | 0.0301 (16) |
| O6 | 0.0664 (18) | 0.136 (3) | 0.0616 (18) | 0.0385 (19) | 0.0151 (15) | 0.038 (2) |
| Cd1 | 0.04362 (14) | 0.04697 (15) | 0.04136 (15) | 0.02141 (11) | 0.01461 (9) | 0.01174 (10) |
| C1—N1 | 1.335 (5) | C12—N4 | 1.254 (5) |
| C1—C2 | 1.379 (6) | C12—H12A | 0.9300 |
| C1—H1 | 0.9300 | C13—C14 | 1.502 (6) |
| C2—C3 | 1.357 (7) | C13—H13A | 0.9600 |
| C2—H2 | 0.9300 | C13—H13B | 0.9600 |
| C3—C4 | 1.378 (7) | C13—H13C | 0.9600 |
| C3—H3 | 0.9300 | C14—O4 | 1.235 (5) |
| C4—C5 | 1.377 (6) | C14—O3 | 1.246 (5) |
| C4—H4 | 0.9300 | C15—C16 | 1.499 (5) |
| C5—N1 | 1.342 (5) | C15—H15A | 0.9600 |
| C5—C6 | 1.472 (5) | C15—H15B | 0.9600 |
| C6—N2 | 1.263 (5) | C15—H15C | 0.9600 |
| C6—H6A | 0.9300 | C16—O6 | 1.237 (5) |
| C7—N3 | 1.330 (5) | C16—O5 | 1.248 (4) |
| C7—C8 | 1.384 (6) | N2—O1 | 1.373 (4) |
| C7—H7 | 0.9300 | N4—O2 | 1.367 (4) |
| C8—C9 | 1.366 (6) | O1—H1B | 0.830 (10) |
| C8—H8 | 0.9300 | O2—H2B | 0.83 (5) |
| C9—C10 | 1.359 (6) | Cd1—N1 | 2.438 (3) |
| C9—H9 | 0.9300 | Cd1—N2 | 2.362 (3) |
| C10—C11 | 1.376 (5) | Cd1—N3 | 2.411 (3) |
| C10—H10 | 0.9300 | Cd1—N4 | 2.344 (3) |
| C11—N3 | 1.346 (4) | Cd1—O3 | 2.245 (3) |
| C11—C12 | 1.468 (6) | Cd1—O5 | 2.210 (3) |
| N1—C1—C2 | 122.3 (4) | O4—C14—C13 | 117.2 (4) |
| N1—C1—H1 | 118.8 | O3—C14—C13 | 117.3 (4) |
| C2—C1—H1 | 118.8 | C16—C15—H15A | 109.5 |
| C3—C2—C1 | 119.3 (4) | C16—C15—H15B | 109.5 |
| C3—C2—H2 | 120.3 | H15A—C15—H15B | 109.5 |
| C1—C2—H2 | 120.3 | C16—C15—H15C | 109.5 |
| C2—C3—C4 | 119.4 (4) | H15A—C15—H15C | 109.5 |
| C2—C3—H3 | 120.3 | H15B—C15—H15C | 109.5 |
| C4—C3—H3 | 120.3 | O6—C16—O5 | 124.8 (4) |
| C5—C4—C3 | 118.6 (4) | O6—C16—C15 | 118.3 (3) |
| C5—C4—H4 | 120.7 | O5—C16—C15 | 116.9 (4) |
| C3—C4—H4 | 120.7 | C1—N1—C5 | 118.0 (3) |
| N1—C5—C4 | 122.4 (4) | C1—N1—Cd1 | 127.0 (2) |
| N1—C5—C6 | 116.9 (3) | C5—N1—Cd1 | 115.0 (2) |
| C4—C5—C6 | 120.7 (4) | C6—N2—O1 | 115.0 (3) |
| N2—C6—C5 | 119.1 (3) | C6—N2—Cd1 | 118.9 (2) |
| N2—C6—H6A | 120.4 | O1—N2—Cd1 | 124.7 (2) |
| C5—C6—H6A | 120.4 | C7—N3—C11 | 117.1 (3) |
| N3—C7—C8 | 123.4 (4) | C7—N3—Cd1 | 127.8 (2) |
| N3—C7—H7 | 118.3 | C11—N3—Cd1 | 115.0 (2) |
| C8—C7—H7 | 118.3 | C12—N4—O2 | 115.3 (3) |
| C9—C8—C7 | 118.3 (4) | C12—N4—Cd1 | 118.4 (2) |
| C9—C8—H8 | 120.8 | O2—N4—Cd1 | 126.3 (2) |
| C7—C8—H8 | 120.8 | N2—O1—H1B | 103 (3) |
| C10—C9—C8 | 119.2 (4) | N4—O2—H2B | 109 (4) |
| C10—C9—H9 | 120.4 | C14—O3—Cd1 | 129.1 (3) |
| C8—C9—H9 | 120.4 | C16—O5—Cd1 | 124.6 (3) |
| C9—C10—C11 | 119.7 (4) | O5—Cd1—O3 | 95.55 (12) |
| C9—C10—H10 | 120.1 | O5—Cd1—N4 | 96.42 (11) |
| C11—C10—H10 | 120.1 | O3—Cd1—N4 | 100.57 (11) |
| N3—C11—C10 | 122.1 (4) | O5—Cd1—N2 | 103.25 (10) |
| N3—C11—C12 | 116.3 (3) | O3—Cd1—N2 | 91.65 (11) |
| C10—C11—C12 | 121.5 (3) | N4—Cd1—N2 | 155.72 (12) |
| N4—C12—C11 | 120.8 (3) | O5—Cd1—N3 | 92.09 (11) |
| N4—C12—H12A | 119.6 | O3—Cd1—N3 | 168.11 (10) |
| C11—C12—H12A | 119.6 | N4—Cd1—N3 | 69.45 (10) |
| C14—C13—H13A | 109.5 | N2—Cd1—N3 | 95.46 (10) |
| C14—C13—H13B | 109.5 | O5—Cd1—N1 | 170.71 (10) |
| H13A—C13—H13B | 109.5 | O3—Cd1—N1 | 89.02 (11) |
| C14—C13—H13C | 109.5 | N4—Cd1—N1 | 90.68 (10) |
| H13A—C13—H13C | 109.5 | N2—Cd1—N1 | 68.45 (10) |
| H13B—C13—H13C | 109.5 | N3—Cd1—N1 | 84.77 (10) |
| O4—C14—O3 | 125.5 (4) | ||
| N1—C1—C2—C3 | −1.5 (7) | C14—O3—Cd1—N3 | 43.8 (7) |
| C1—C2—C3—C4 | 1.0 (8) | C14—O3—Cd1—N1 | 102.2 (4) |
| C2—C3—C4—C5 | 0.8 (8) | C12—N4—Cd1—O5 | −92.2 (3) |
| C3—C4—C5—N1 | −2.3 (7) | O2—N4—Cd1—O5 | 88.5 (3) |
| C3—C4—C5—C6 | 177.3 (4) | C12—N4—Cd1—O3 | 170.9 (3) |
| N1—C5—C6—N2 | 7.4 (6) | O2—N4—Cd1—O3 | −8.4 (3) |
| C4—C5—C6—N2 | −172.3 (4) | C12—N4—Cd1—N2 | 51.9 (4) |
| N3—C7—C8—C9 | −0.9 (6) | O2—N4—Cd1—N2 | −127.4 (4) |
| C7—C8—C9—C10 | −0.4 (7) | C12—N4—Cd1—N3 | −2.4 (3) |
| C8—C9—C10—C11 | 1.4 (7) | O2—N4—Cd1—N3 | 178.3 (4) |
| C9—C10—C11—N3 | −1.2 (7) | C12—N4—Cd1—N1 | 81.8 (3) |
| C9—C10—C11—C12 | 178.3 (4) | O2—N4—Cd1—N1 | −97.5 (3) |
| N3—C11—C12—N4 | 0.6 (6) | C6—N2—Cd1—O5 | −172.9 (3) |
| C10—C11—C12—N4 | −178.9 (4) | O1—N2—Cd1—O5 | −7.2 (3) |
| C2—C1—N1—C5 | 0.1 (6) | C6—N2—Cd1—O3 | −76.8 (3) |
| C2—C1—N1—Cd1 | 179.1 (3) | O1—N2—Cd1—O3 | 88.9 (3) |
| C4—C5—N1—C1 | 1.9 (6) | C6—N2—Cd1—N4 | 43.8 (5) |
| C6—C5—N1—C1 | −177.8 (3) | O1—N2—Cd1—N4 | −150.5 (3) |
| C4—C5—N1—Cd1 | −177.3 (4) | C6—N2—Cd1—N3 | 93.6 (3) |
| C6—C5—N1—Cd1 | 3.0 (4) | O1—N2—Cd1—N3 | −100.7 (3) |
| C5—C6—N2—O1 | 178.4 (3) | C6—N2—Cd1—N1 | 11.5 (3) |
| C5—C6—N2—Cd1 | −14.5 (5) | O1—N2—Cd1—N1 | 177.2 (3) |
| C8—C7—N3—C11 | 1.1 (5) | C7—N3—Cd1—O5 | −84.9 (3) |
| C8—C7—N3—Cd1 | −175.4 (3) | C11—N3—Cd1—O5 | 98.6 (2) |
| C10—C11—N3—C7 | 0.0 (5) | C7—N3—Cd1—O3 | 145.1 (5) |
| C12—C11—N3—C7 | −179.5 (3) | C11—N3—Cd1—O3 | −31.4 (6) |
| C10—C11—N3—Cd1 | 176.9 (3) | C7—N3—Cd1—N4 | 179.1 (3) |
| C12—C11—N3—Cd1 | −2.6 (4) | C11—N3—Cd1—N4 | 2.6 (2) |
| C11—C12—N4—O2 | −178.7 (4) | C7—N3—Cd1—N2 | 18.7 (3) |
| C11—C12—N4—Cd1 | 2.0 (5) | C11—N3—Cd1—N2 | −157.8 (2) |
| O4—C14—O3—Cd1 | −6.0 (6) | C7—N3—Cd1—N1 | 86.4 (3) |
| C13—C14—O3—Cd1 | 175.2 (3) | C11—N3—Cd1—N1 | −90.1 (2) |
| O6—C16—O5—Cd1 | 6.3 (6) | C1—N1—Cd1—O5 | 146.5 (6) |
| C15—C16—O5—Cd1 | −172.3 (3) | C5—N1—Cd1—O5 | −34.4 (7) |
| C16—O5—Cd1—O3 | −111.5 (3) | C1—N1—Cd1—O3 | −93.9 (3) |
| C16—O5—Cd1—N4 | 147.2 (3) | C5—N1—Cd1—O3 | 85.2 (3) |
| C16—O5—Cd1—N2 | −18.5 (3) | C1—N1—Cd1—N4 | 6.7 (3) |
| C16—O5—Cd1—N3 | 77.6 (3) | C5—N1—Cd1—N4 | −174.3 (3) |
| C16—O5—Cd1—N1 | 7.6 (8) | C1—N1—Cd1—N2 | 173.9 (3) |
| C14—O3—Cd1—O5 | −85.9 (4) | C5—N1—Cd1—N2 | −7.0 (3) |
| C14—O3—Cd1—N4 | 11.7 (4) | C1—N1—Cd1—N3 | 76.0 (3) |
| C14—O3—Cd1—N2 | 170.6 (3) | C5—N1—Cd1—N3 | −105.0 (3) |
| H··· | ||||
| O1—H1 | 0.83 (2) | 1.72 (1) | 2.545 (4) | 169 (4) |
| O2—H2 | 0.83 (5) | 1.69 (5) | 2.512 (5) | 175 (6) |
| C6—H6 | 0.93 | 2.52 | 3.381 (5) | 153 |
| C9—H9···O5ii | 0.93 | 2.55 | 3.387 (6) | 151 |
| C12—H12 | 0.93 | 2.56 | 3.264 (6) | 132 |
Selected bond lengths (Å)
| Cd1—N1 | 2.438 (3) |
| Cd1—N2 | 2.362 (3) |
| Cd1—N3 | 2.411 (3) |
| Cd1—N4 | 2.344 (3) |
| Cd1—O3 | 2.245 (3) |
| Cd1—O5 | 2.210 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.83 (2) | 1.72 (1) | 2.545 (4) | 169 (4) |
| O2—H2 | 0.83 (5) | 1.69 (5) | 2.512 (5) | 175 (6) |
| C6—H6 | 0.93 | 2.52 | 3.381 (5) | 153 |
| C9—H9⋯O5ii | 0.93 | 2.55 | 3.387 (6) | 151 |
| C12—H12 | 0.93 | 2.56 | 3.264 (6) | 132 |
Symmetry codes: (i) ; (ii) ; (iii) .