Literature DB >> 22904745

Bis(acetato-κO)bis-(2-pyridine-aldoxime-κ(2)N,N')cadmium.

Sadif A Shirvan1, Sara Haydari Dezfuli.   

Abstract

In the title mol-ecule, [Cd(CH(3)COO)(2)(C(6)H(6)N(2)O)(2)], the Cd(II) cation is N,N'-chelated by two 2-pyridine-aldoxime ligands and coordinated by two acetate anions in a distorted octa-hedral geometry. The hy-droxy groups of the 2-pyridine-aldoxime ligands link to the acetate anions via intra-molecular O-H⋯O hydrogen bonds. Weak inter-molecular C-H⋯O hydrogen bonds occur in the crystal.

Entities:  

Year:  2012        PMID: 22904745      PMCID: PMC3414138          DOI: 10.1107/S1600536812031819

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Abu-Youssef et al. (2010 ▶); Costa et al. (2009 ▶); Ha (2010 ▶); Konidaris et al. (2010 ▶); Korpi et al. (2005 ▶); Milios et al. (2004 ▶); Mukherjee et al.(2009 ▶); Torabi et al. (2005 ▶).

Experimental

Crystal data

[Cd(C2H3O2)2(C6H6N2O)2] M = 474.75 Triclinic, a = 8.7875 (6) Å b = 9.0946 (6) Å c = 13.8873 (11) Å α = 100.837 (6)° β = 97.994 (6)° γ = 114.700 (5)° V = 960.42 (12) Å3 Z = 2 Mo Kα radiation μ = 1.18 mm−1 T = 298 K 0.48 × 0.38 × 0.30 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.621, T max = 0.751 8165 measured reflections 3758 independent reflections 3236 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.084 S = 0.99 3758 reflections 252 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.96 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812031819/xu5584sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031819/xu5584Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C2H3O2)2(C6H6N2O)2]Z = 2
Mr = 474.75F(000) = 476
Triclinic, P1Dx = 1.642 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7875 (6) ÅCell parameters from 8165 reflections
b = 9.0946 (6) Åθ = 1.5–26.0°
c = 13.8873 (11) ŵ = 1.18 mm1
α = 100.837 (6)°T = 298 K
β = 97.994 (6)°Prism, colorless
γ = 114.700 (5)°0.48 × 0.38 × 0.30 mm
V = 960.42 (12) Å3
Bruker APEXII CCD area-detector diffractometer3758 independent reflections
Radiation source: fine-focus sealed tube3236 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.056
ω scansθmax = 26.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.621, Tmax = 0.751k = −11→11
8165 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0491P)2] where P = (Fo2 + 2Fc2)/3
3758 reflections(Δ/σ)max = 0.010
252 parametersΔρmax = 0.64 e Å3
2 restraintsΔρmin = −0.96 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8192 (5)0.7991 (5)0.9158 (3)0.0581 (9)
H10.87590.80330.86390.070*
C20.8947 (6)0.7893 (6)1.0068 (3)0.0722 (12)
H20.99920.78431.01520.087*
C30.8151 (6)0.7869 (7)1.0838 (4)0.0845 (14)
H30.86530.78221.14600.101*
C40.6590 (6)0.7916 (7)1.0692 (3)0.0781 (13)
H40.60290.79151.12130.094*
C50.5877 (5)0.7965 (5)0.9757 (3)0.0570 (9)
C60.4177 (5)0.7942 (5)0.9549 (3)0.0601 (9)
H6A0.36280.80311.00670.072*
C70.3108 (5)0.3972 (5)0.6895 (3)0.0564 (9)
H70.22980.41420.72030.068*
C80.2865 (6)0.2340 (5)0.6552 (3)0.0672 (11)
H80.19250.14390.66370.081*
C90.4040 (6)0.2086 (5)0.6088 (4)0.0731 (12)
H90.39170.10060.58530.088*
C100.5391 (6)0.3433 (5)0.5972 (3)0.0686 (11)
H100.61880.32770.56430.082*
C110.5577 (4)0.5027 (5)0.6342 (3)0.0508 (8)
C120.7043 (5)0.6520 (5)0.6258 (3)0.0649 (11)
H12A0.78590.63910.59390.078*
C130.8125 (7)1.3947 (5)0.8418 (4)0.0858 (14)
H13A0.84081.41500.91390.103*
H13B0.71621.41600.82180.103*
H13C0.91021.46820.82140.103*
C140.7660 (5)1.2150 (5)0.7920 (3)0.0560 (9)
C150.0811 (5)0.7410 (6)0.4978 (3)0.0698 (11)
H15A0.10290.67270.44530.084*
H15B0.11670.85130.48820.084*
H15C−0.04000.69040.49550.084*
C160.1808 (5)0.7544 (5)0.5986 (3)0.0540 (9)
N10.6675 (4)0.8026 (4)0.8998 (2)0.0509 (7)
N20.3474 (4)0.7801 (4)0.8656 (2)0.0520 (7)
N30.4438 (3)0.5309 (3)0.6806 (2)0.0459 (6)
N40.7206 (4)0.7966 (4)0.6613 (2)0.0519 (7)
O10.1873 (4)0.7749 (5)0.8529 (2)0.0717 (8)
H1B0.159 (5)0.763 (5)0.7912 (10)0.058 (12)*
O20.8603 (4)0.9252 (4)0.6470 (3)0.0863 (10)
H2B0.864 (7)1.016 (4)0.675 (4)0.11 (2)*
O30.6409 (4)1.1036 (3)0.8110 (2)0.0700 (8)
O40.8568 (4)1.1901 (4)0.7372 (3)0.0850 (9)
O50.3410 (3)0.8162 (4)0.6126 (2)0.0682 (7)
O60.0997 (4)0.7014 (5)0.6609 (2)0.0892 (10)
Cd10.51653 (3)0.82333 (3)0.745759 (18)0.04330 (10)
U11U22U33U12U13U23
C10.062 (2)0.063 (2)0.051 (2)0.0298 (19)0.0140 (17)0.0144 (18)
C20.072 (3)0.082 (3)0.066 (3)0.042 (2)0.006 (2)0.019 (2)
C30.088 (3)0.109 (4)0.055 (3)0.044 (3)0.002 (2)0.032 (3)
C40.087 (3)0.106 (4)0.045 (2)0.045 (3)0.015 (2)0.026 (2)
C50.064 (2)0.061 (2)0.0416 (19)0.0260 (18)0.0115 (16)0.0115 (17)
C60.066 (2)0.073 (3)0.046 (2)0.032 (2)0.0223 (17)0.0176 (18)
C70.0511 (19)0.058 (2)0.054 (2)0.0191 (17)0.0148 (16)0.0152 (18)
C80.069 (2)0.054 (2)0.064 (3)0.0150 (19)0.012 (2)0.019 (2)
C90.088 (3)0.048 (2)0.077 (3)0.030 (2)0.012 (2)0.013 (2)
C100.076 (3)0.062 (2)0.074 (3)0.040 (2)0.023 (2)0.009 (2)
C110.0512 (18)0.055 (2)0.0488 (19)0.0270 (16)0.0140 (15)0.0122 (16)
C120.060 (2)0.071 (3)0.074 (3)0.034 (2)0.036 (2)0.018 (2)
C130.098 (3)0.047 (2)0.095 (4)0.020 (2)0.022 (3)0.010 (2)
C140.065 (2)0.053 (2)0.045 (2)0.0239 (18)0.0067 (17)0.0140 (17)
C150.062 (2)0.092 (3)0.059 (2)0.038 (2)0.0087 (19)0.024 (2)
C160.051 (2)0.055 (2)0.057 (2)0.0275 (17)0.0068 (16)0.0141 (17)
N10.0543 (16)0.0539 (17)0.0436 (16)0.0251 (14)0.0106 (13)0.0112 (13)
N20.0485 (15)0.0629 (19)0.0475 (17)0.0252 (14)0.0201 (13)0.0163 (14)
N30.0439 (14)0.0479 (16)0.0434 (15)0.0199 (12)0.0110 (11)0.0097 (12)
N40.0469 (15)0.0542 (17)0.0562 (17)0.0202 (13)0.0243 (13)0.0174 (14)
O10.0535 (15)0.110 (2)0.0619 (19)0.0426 (16)0.0251 (13)0.0259 (18)
O20.0739 (19)0.064 (2)0.123 (3)0.0204 (16)0.064 (2)0.026 (2)
O30.0821 (19)0.0466 (15)0.0721 (18)0.0207 (14)0.0283 (15)0.0095 (14)
O40.094 (2)0.0665 (19)0.092 (2)0.0296 (17)0.0422 (19)0.0197 (18)
O50.0527 (15)0.088 (2)0.0659 (18)0.0314 (14)0.0095 (12)0.0301 (16)
O60.0664 (18)0.136 (3)0.0616 (18)0.0385 (19)0.0151 (15)0.038 (2)
Cd10.04362 (14)0.04697 (15)0.04136 (15)0.02141 (11)0.01461 (9)0.01174 (10)
C1—N11.335 (5)C12—N41.254 (5)
C1—C21.379 (6)C12—H12A0.9300
C1—H10.9300C13—C141.502 (6)
C2—C31.357 (7)C13—H13A0.9600
C2—H20.9300C13—H13B0.9600
C3—C41.378 (7)C13—H13C0.9600
C3—H30.9300C14—O41.235 (5)
C4—C51.377 (6)C14—O31.246 (5)
C4—H40.9300C15—C161.499 (5)
C5—N11.342 (5)C15—H15A0.9600
C5—C61.472 (5)C15—H15B0.9600
C6—N21.263 (5)C15—H15C0.9600
C6—H6A0.9300C16—O61.237 (5)
C7—N31.330 (5)C16—O51.248 (4)
C7—C81.384 (6)N2—O11.373 (4)
C7—H70.9300N4—O21.367 (4)
C8—C91.366 (6)O1—H1B0.830 (10)
C8—H80.9300O2—H2B0.83 (5)
C9—C101.359 (6)Cd1—N12.438 (3)
C9—H90.9300Cd1—N22.362 (3)
C10—C111.376 (5)Cd1—N32.411 (3)
C10—H100.9300Cd1—N42.344 (3)
C11—N31.346 (4)Cd1—O32.245 (3)
C11—C121.468 (6)Cd1—O52.210 (3)
N1—C1—C2122.3 (4)O4—C14—C13117.2 (4)
N1—C1—H1118.8O3—C14—C13117.3 (4)
C2—C1—H1118.8C16—C15—H15A109.5
C3—C2—C1119.3 (4)C16—C15—H15B109.5
C3—C2—H2120.3H15A—C15—H15B109.5
C1—C2—H2120.3C16—C15—H15C109.5
C2—C3—C4119.4 (4)H15A—C15—H15C109.5
C2—C3—H3120.3H15B—C15—H15C109.5
C4—C3—H3120.3O6—C16—O5124.8 (4)
C5—C4—C3118.6 (4)O6—C16—C15118.3 (3)
C5—C4—H4120.7O5—C16—C15116.9 (4)
C3—C4—H4120.7C1—N1—C5118.0 (3)
N1—C5—C4122.4 (4)C1—N1—Cd1127.0 (2)
N1—C5—C6116.9 (3)C5—N1—Cd1115.0 (2)
C4—C5—C6120.7 (4)C6—N2—O1115.0 (3)
N2—C6—C5119.1 (3)C6—N2—Cd1118.9 (2)
N2—C6—H6A120.4O1—N2—Cd1124.7 (2)
C5—C6—H6A120.4C7—N3—C11117.1 (3)
N3—C7—C8123.4 (4)C7—N3—Cd1127.8 (2)
N3—C7—H7118.3C11—N3—Cd1115.0 (2)
C8—C7—H7118.3C12—N4—O2115.3 (3)
C9—C8—C7118.3 (4)C12—N4—Cd1118.4 (2)
C9—C8—H8120.8O2—N4—Cd1126.3 (2)
C7—C8—H8120.8N2—O1—H1B103 (3)
C10—C9—C8119.2 (4)N4—O2—H2B109 (4)
C10—C9—H9120.4C14—O3—Cd1129.1 (3)
C8—C9—H9120.4C16—O5—Cd1124.6 (3)
C9—C10—C11119.7 (4)O5—Cd1—O395.55 (12)
C9—C10—H10120.1O5—Cd1—N496.42 (11)
C11—C10—H10120.1O3—Cd1—N4100.57 (11)
N3—C11—C10122.1 (4)O5—Cd1—N2103.25 (10)
N3—C11—C12116.3 (3)O3—Cd1—N291.65 (11)
C10—C11—C12121.5 (3)N4—Cd1—N2155.72 (12)
N4—C12—C11120.8 (3)O5—Cd1—N392.09 (11)
N4—C12—H12A119.6O3—Cd1—N3168.11 (10)
C11—C12—H12A119.6N4—Cd1—N369.45 (10)
C14—C13—H13A109.5N2—Cd1—N395.46 (10)
C14—C13—H13B109.5O5—Cd1—N1170.71 (10)
H13A—C13—H13B109.5O3—Cd1—N189.02 (11)
C14—C13—H13C109.5N4—Cd1—N190.68 (10)
H13A—C13—H13C109.5N2—Cd1—N168.45 (10)
H13B—C13—H13C109.5N3—Cd1—N184.77 (10)
O4—C14—O3125.5 (4)
N1—C1—C2—C3−1.5 (7)C14—O3—Cd1—N343.8 (7)
C1—C2—C3—C41.0 (8)C14—O3—Cd1—N1102.2 (4)
C2—C3—C4—C50.8 (8)C12—N4—Cd1—O5−92.2 (3)
C3—C4—C5—N1−2.3 (7)O2—N4—Cd1—O588.5 (3)
C3—C4—C5—C6177.3 (4)C12—N4—Cd1—O3170.9 (3)
N1—C5—C6—N27.4 (6)O2—N4—Cd1—O3−8.4 (3)
C4—C5—C6—N2−172.3 (4)C12—N4—Cd1—N251.9 (4)
N3—C7—C8—C9−0.9 (6)O2—N4—Cd1—N2−127.4 (4)
C7—C8—C9—C10−0.4 (7)C12—N4—Cd1—N3−2.4 (3)
C8—C9—C10—C111.4 (7)O2—N4—Cd1—N3178.3 (4)
C9—C10—C11—N3−1.2 (7)C12—N4—Cd1—N181.8 (3)
C9—C10—C11—C12178.3 (4)O2—N4—Cd1—N1−97.5 (3)
N3—C11—C12—N40.6 (6)C6—N2—Cd1—O5−172.9 (3)
C10—C11—C12—N4−178.9 (4)O1—N2—Cd1—O5−7.2 (3)
C2—C1—N1—C50.1 (6)C6—N2—Cd1—O3−76.8 (3)
C2—C1—N1—Cd1179.1 (3)O1—N2—Cd1—O388.9 (3)
C4—C5—N1—C11.9 (6)C6—N2—Cd1—N443.8 (5)
C6—C5—N1—C1−177.8 (3)O1—N2—Cd1—N4−150.5 (3)
C4—C5—N1—Cd1−177.3 (4)C6—N2—Cd1—N393.6 (3)
C6—C5—N1—Cd13.0 (4)O1—N2—Cd1—N3−100.7 (3)
C5—C6—N2—O1178.4 (3)C6—N2—Cd1—N111.5 (3)
C5—C6—N2—Cd1−14.5 (5)O1—N2—Cd1—N1177.2 (3)
C8—C7—N3—C111.1 (5)C7—N3—Cd1—O5−84.9 (3)
C8—C7—N3—Cd1−175.4 (3)C11—N3—Cd1—O598.6 (2)
C10—C11—N3—C70.0 (5)C7—N3—Cd1—O3145.1 (5)
C12—C11—N3—C7−179.5 (3)C11—N3—Cd1—O3−31.4 (6)
C10—C11—N3—Cd1176.9 (3)C7—N3—Cd1—N4179.1 (3)
C12—C11—N3—Cd1−2.6 (4)C11—N3—Cd1—N42.6 (2)
C11—C12—N4—O2−178.7 (4)C7—N3—Cd1—N218.7 (3)
C11—C12—N4—Cd12.0 (5)C11—N3—Cd1—N2−157.8 (2)
O4—C14—O3—Cd1−6.0 (6)C7—N3—Cd1—N186.4 (3)
C13—C14—O3—Cd1175.2 (3)C11—N3—Cd1—N1−90.1 (2)
O6—C16—O5—Cd16.3 (6)C1—N1—Cd1—O5146.5 (6)
C15—C16—O5—Cd1−172.3 (3)C5—N1—Cd1—O5−34.4 (7)
C16—O5—Cd1—O3−111.5 (3)C1—N1—Cd1—O3−93.9 (3)
C16—O5—Cd1—N4147.2 (3)C5—N1—Cd1—O385.2 (3)
C16—O5—Cd1—N2−18.5 (3)C1—N1—Cd1—N46.7 (3)
C16—O5—Cd1—N377.6 (3)C5—N1—Cd1—N4−174.3 (3)
C16—O5—Cd1—N17.6 (8)C1—N1—Cd1—N2173.9 (3)
C14—O3—Cd1—O5−85.9 (4)C5—N1—Cd1—N2−7.0 (3)
C14—O3—Cd1—N411.7 (4)C1—N1—Cd1—N376.0 (3)
C14—O3—Cd1—N2170.6 (3)C5—N1—Cd1—N3−105.0 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1B···O60.83 (2)1.72 (1)2.545 (4)169 (4)
O2—H2B···O40.83 (5)1.69 (5)2.512 (5)175 (6)
C6—H6A···O3i0.932.523.381 (5)153
C9—H9···O5ii0.932.553.387 (6)151
C12—H12A···O6iii0.932.563.264 (6)132
Table 1

Selected bond lengths (Å)

Cd1—N12.438 (3)
Cd1—N22.362 (3)
Cd1—N32.411 (3)
Cd1—N42.344 (3)
Cd1—O32.245 (3)
Cd1—O52.210 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1B⋯O60.83 (2)1.72 (1)2.545 (4)169 (4)
O2—H2B⋯O40.83 (5)1.69 (5)2.512 (5)175 (6)
C6—H6A⋯O3i 0.932.523.381 (5)153
C9—H9⋯O5ii 0.932.553.387 (6)151
C12—H12A⋯O6iii 0.932.563.264 (6)132

Symmetry codes: (i) ; (ii) ; (iii) .

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