Literature DB >> 22904740

Poly[diaqua-(μ(5)-1H-imidazole-4,5-di-carboxyl-ato)(μ(4)-1H-imidazole-4,5-di-carboxyl-ato)tris-ilver(I)ytterbium(III)].

Si-Ming Zhu1.   

Abstract

The asymmetric unit of the title compound, [Ag(3)Yb(C(5)HN(2)O(4))(2)(H(2)O)(2)](n), contains three Ag(I) ions, one Yb(III) ion, two imidazole-4,5-dicarboxyl-ate ligands and two coordinating n class="Chemical">water mol-ecules. The Yb(III) atom is eight-coordinated, in a bicapped trigonal prismatic coordination geometry, by six O atoms from three imidazole-4,5-dicarboxyl-ate ligands and two coordinating water mol-ecules. The two-coordinated Ag(I) ions exhibit three types of coordination environments. One Ag(I) atom is bonded to two N atoms from two different imidazole-4,5-dicarboxyl-ate ligands. The other two Ag(I) atoms are each coordinated by one O atom and one N atom from two different imidazole-4,5-dicarboxyl-ate ligands. These metal coordination units are connected by bridging imidazole-4,5-dicarboxyl-ate ligands, generating a two-dimensional heterometallic layer. These layers are stacked along the a axis via O-H⋯O hydrogen-bonding inter-actions to generate a three-dimensional framework.

Entities:  

Year:  2012        PMID: 22904740      PMCID: PMC3414133          DOI: 10.1107/S1600536812031303

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the application of lanthanide–transition n class="Chemical">metal heterometallic complexes with bridging multifunctional organic ligands, see: Cheng et al. (2006 ▶); Kuang et al. (2007 ▶); Sun et al. (2006 ▶); Zhu et al. (2010 ▶).

Experimental

Crystal data

[Ag3Yb(C5HN2O4)2(H2O)2] M = 838.84 Monoclinic, a = 12.6850 (7) Å b = 8.6643 (5) Å c = 28.4015 (16) Å β = 97.686 (1)° V = 3093.5 (3) Å3 Z = 8 Mo Kα radiation μ = 9.80 mm−1 T = 295 K 0.20 × 0.18 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.162, T max = 0.189 7613 measured reflections 2794 independent reflections 2629 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.055 S = 1.19 2794 reflections 265 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.58 e Å−3 Δρmin = −1.29 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812031303/rk2366sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031303/rk2366Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag3Yb(C5HN2O4)2(H2O)2]F(000) = 3080
Mr = 838.84Dx = 3.602 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4947 reflections
a = 12.6850 (7) Åθ = 2.9–28.1°
b = 8.6643 (5) ŵ = 9.80 mm1
c = 28.4015 (16) ÅT = 295 K
β = 97.686 (1)°Block, colourless
V = 3093.5 (3) Å30.20 × 0.18 × 0.17 mm
Z = 8
Bruker APEXII CCD diffractometer2794 independent reflections
Radiation source: fine-focus sealed tube2629 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scanθmax = 25.2°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→15
Tmin = 0.162, Tmax = 0.189k = −10→8
7613 measured reflectionsl = −34→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.055H atoms treated by a mixture of independent and constrained refinement
S = 1.19w = 1/[σ2(Fo2) + (0.0213P)2 + 8.4063P] where P = (Fo2 + 2Fc2)/3
2794 reflections(Δ/σ)max = 0.001
265 parametersΔρmax = 0.58 e Å3
4 restraintsΔρmin = −1.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Yb10.062585 (17)0.17662 (3)0.534835 (7)0.01157 (8)
Ag1−0.08531 (4)0.52086 (5)0.638040 (16)0.02463 (12)
Ag20.18074 (4)0.78628 (5)0.663984 (15)0.02278 (12)
Ag3−0.12303 (3)0.14446 (5)0.739965 (13)0.02025 (11)
C10.1656 (4)0.4861 (6)0.59111 (17)0.0128 (11)
C20.1594 (4)0.4326 (6)0.64091 (16)0.0114 (10)
C30.1486 (4)0.4663 (6)0.71522 (17)0.0163 (11)
H30.14340.51430.74410.020*
C40.1601 (4)0.2898 (6)0.66262 (17)0.0119 (10)
C50.1733 (4)0.1266 (6)0.64641 (17)0.0120 (11)
C6−0.0760 (4)0.1879 (6)0.62733 (17)0.0121 (11)
C7−0.0744 (4)0.0214 (6)0.64145 (16)0.0124 (11)
C8−0.0872 (4)−0.1680 (6)0.68906 (18)0.0173 (12)
H8−0.0933−0.22300.71670.021*
C9−0.0685 (4)−0.1163 (6)0.61662 (17)0.0114 (10)
C10−0.0598 (4)−0.1506 (6)0.56693 (17)0.0121 (11)
O10.1765 (3)0.6248 (4)0.58442 (12)0.0255 (10)
O20.1559 (3)0.3874 (4)0.55739 (12)0.0172 (8)
O30.1588 (3)0.0949 (4)0.60304 (12)0.0169 (8)
O40.1991 (3)0.0300 (4)0.67886 (12)0.0196 (8)
O5−0.1075 (3)0.2825 (4)0.65620 (13)0.0200 (8)
O6−0.0463 (3)0.2298 (4)0.58910 (12)0.0171 (8)
O7−0.0256 (3)−0.0485 (4)0.54003 (11)0.0164 (8)
O8−0.0893 (3)−0.2776 (4)0.54873 (12)0.0193 (8)
N10.1517 (3)0.5441 (5)0.67471 (14)0.0148 (9)
N20.1537 (4)0.3137 (5)0.71038 (14)0.0149 (9)
N3−0.0869 (3)−0.0151 (5)0.68748 (14)0.0140 (9)
N4−0.0780 (3)−0.2366 (5)0.64767 (14)0.0142 (9)
O1W0.2245 (3)0.0680 (5)0.51848 (13)0.0221 (9)
H1W0.275 (4)0.079 (8)0.5390 (17)0.033*
H2W0.249 (5)0.075 (8)0.4936 (13)0.033*
O2W−0.0917 (4)0.2942 (6)0.50178 (14)0.0347 (11)
H4W−0.130 (5)0.298 (9)0.4768 (15)0.052*
H3W−0.138 (5)0.331 (8)0.515 (3)0.052*
U11U22U33U12U13U23
Yb10.01795 (13)0.01015 (13)0.00699 (12)−0.00344 (9)0.00307 (8)−0.00139 (8)
Ag10.0334 (3)0.0086 (2)0.0326 (3)−0.00032 (18)0.00726 (19)0.00049 (18)
Ag20.0308 (3)0.0085 (2)0.0290 (2)−0.00071 (17)0.00390 (19)−0.00148 (17)
Ag30.0304 (3)0.0191 (2)0.0125 (2)0.00166 (18)0.00737 (17)−0.00609 (16)
C10.015 (3)0.010 (3)0.012 (2)−0.003 (2)−0.001 (2)0.001 (2)
C20.015 (3)0.011 (3)0.008 (2)0.001 (2)0.0039 (19)0.000 (2)
C30.027 (3)0.015 (3)0.008 (2)0.002 (2)0.007 (2)−0.003 (2)
C40.020 (3)0.008 (3)0.009 (2)−0.002 (2)0.004 (2)−0.0018 (19)
C50.010 (2)0.012 (3)0.014 (3)−0.002 (2)0.0024 (19)−0.001 (2)
C60.016 (3)0.010 (3)0.010 (2)−0.002 (2)0.001 (2)−0.001 (2)
C70.018 (3)0.011 (3)0.008 (2)0.003 (2)0.0023 (19)−0.0003 (19)
C80.026 (3)0.012 (3)0.015 (3)0.000 (2)0.009 (2)0.003 (2)
C90.012 (3)0.008 (3)0.015 (2)−0.003 (2)0.004 (2)0.002 (2)
C100.011 (3)0.011 (3)0.013 (2)−0.001 (2)−0.001 (2)0.001 (2)
O10.052 (3)0.010 (2)0.0124 (19)−0.0062 (18)−0.0007 (18)0.0020 (15)
O20.030 (2)0.014 (2)0.0091 (17)−0.0080 (16)0.0047 (15)−0.0025 (15)
O30.026 (2)0.015 (2)0.0093 (17)0.0017 (16)0.0018 (14)−0.0024 (15)
O40.039 (2)0.0067 (19)0.0121 (18)0.0035 (17)0.0004 (16)−0.0005 (15)
O50.035 (2)0.009 (2)0.0194 (19)0.0001 (16)0.0143 (17)−0.0007 (16)
O60.026 (2)0.014 (2)0.0124 (18)−0.0004 (16)0.0070 (15)0.0023 (15)
O70.026 (2)0.015 (2)0.0091 (17)−0.0094 (16)0.0056 (15)−0.0020 (15)
O80.029 (2)0.013 (2)0.0175 (19)−0.0060 (16)0.0063 (16)−0.0095 (16)
N10.022 (2)0.011 (2)0.011 (2)−0.0014 (19)0.0023 (17)−0.0002 (18)
N20.024 (2)0.013 (2)0.008 (2)−0.0016 (18)0.0048 (17)−0.0012 (17)
N30.023 (2)0.010 (2)0.010 (2)0.0014 (18)0.0071 (18)0.0000 (17)
N40.022 (2)0.007 (2)0.015 (2)0.0018 (18)0.0071 (18)0.0032 (17)
O1W0.019 (2)0.032 (2)0.015 (2)−0.0022 (18)0.0042 (15)−0.0015 (18)
O2W0.039 (3)0.052 (3)0.014 (2)0.024 (2)0.0048 (18)0.008 (2)
Yb1—O22.224 (4)C4—N21.385 (6)
Yb1—O62.251 (3)C4—C51.504 (7)
Yb1—O32.261 (3)C5—O31.251 (6)
Yb1—O72.263 (3)C5—O41.255 (6)
Yb1—O2W2.293 (4)C6—O61.249 (6)
Yb1—O1W2.361 (4)C6—O51.262 (6)
Yb1—O7i2.389 (3)C6—C71.496 (7)
Yb1—O8i2.594 (4)C7—N31.375 (6)
Yb1—C10i2.895 (5)C7—C91.393 (7)
Yb1—Yb1i3.8682 (5)C8—N31.326 (7)
Ag1—N4ii2.119 (4)C8—N41.336 (7)
Ag1—O52.157 (4)C8—H80.9300
Ag2—N12.159 (4)C9—N41.381 (6)
Ag2—O4ii2.160 (4)C9—C101.461 (7)
Ag2—Ag3iii3.3055 (6)C10—O81.251 (6)
Ag3—N2iv2.107 (4)C10—O71.283 (6)
Ag3—N32.127 (4)C10—Yb1i2.895 (5)
Ag3—Ag3iv3.0969 (9)O4—Ag2vi2.160 (3)
Ag3—Ag2v3.3055 (6)O7—Yb1i2.389 (3)
C1—O11.228 (6)O8—Yb1i2.594 (4)
C1—O21.277 (6)N2—Ag3iv2.107 (4)
C1—C21.500 (7)N4—Ag1vi2.119 (4)
C2—N11.375 (6)O1W—H1W0.82 (2)
C2—C41.382 (7)O1W—H2W0.81 (2)
C3—N21.331 (7)O2W—H4W0.81 (2)
C3—N11.339 (7)O2W—H3W0.81 (2)
C3—H30.9300
O2—Yb1—O689.21 (13)N1—C2—C4108.3 (4)
O2—Yb1—O378.74 (13)N1—C2—C1117.3 (4)
O6—Yb1—O377.75 (13)C4—C2—C1134.4 (5)
O2—Yb1—O7159.69 (12)N2—C3—N1113.8 (4)
O6—Yb1—O777.17 (13)N2—C3—H3123.1
O3—Yb1—O783.64 (13)N1—C3—H3123.1
O2—Yb1—O2W98.34 (17)C2—C4—N2107.8 (4)
O6—Yb1—O2W67.73 (13)C2—C4—C5134.4 (4)
O3—Yb1—O2W145.43 (14)N2—C4—C5117.6 (4)
O7—Yb1—O2W90.43 (17)O3—C5—O4124.5 (5)
O2—Yb1—O1W86.59 (14)O3—C5—C4120.0 (4)
O6—Yb1—O1W147.79 (13)O4—C5—C4115.5 (4)
O3—Yb1—O1W70.10 (13)O6—C6—O5122.3 (5)
O7—Yb1—O1W96.89 (14)O6—C6—C7121.2 (4)
O2W—Yb1—O1W144.46 (13)O5—C6—C7116.5 (4)
O2—Yb1—O7i132.22 (12)N3—C7—C9107.8 (4)
O6—Yb1—O7i129.72 (12)N3—C7—C6118.5 (4)
O3—Yb1—O7i129.53 (13)C9—C7—C6133.6 (4)
O7—Yb1—O7i67.50 (13)N3—C8—N4114.5 (5)
O2W—Yb1—O7i77.69 (15)N3—C8—H8122.8
O1W—Yb1—O7i73.28 (13)N4—C8—H8122.8
O2—Yb1—O8i81.79 (11)N4—C9—C7107.9 (4)
O6—Yb1—O8i136.44 (12)N4—C9—C10119.2 (4)
O3—Yb1—O8i140.18 (13)C7—C9—C10132.8 (4)
O7—Yb1—O8i118.45 (11)O8—C10—O7117.8 (4)
O2W—Yb1—O8i71.58 (14)O8—C10—C9121.4 (5)
O1W—Yb1—O8i74.40 (13)O7—C10—C9120.7 (4)
O7i—Yb1—O8i51.43 (11)O8—C10—Yb1i63.6 (3)
O2—Yb1—C10i106.65 (13)O7—C10—Yb1i54.5 (2)
O6—Yb1—C10i140.62 (13)C9—C10—Yb1i171.2 (4)
O3—Yb1—C10i139.85 (13)C1—O2—Yb1139.5 (3)
O7—Yb1—C10i93.32 (13)C5—O3—Yb1140.0 (3)
O2W—Yb1—C10i74.33 (14)C5—O4—Ag2vi119.8 (3)
O1W—Yb1—C10i70.57 (13)C6—O5—Ag1113.8 (3)
O7i—Yb1—C10i25.90 (12)C6—O6—Yb1145.0 (3)
O8i—Yb1—C10i25.60 (12)C10—O7—Yb1147.5 (3)
O2—Yb1—Yb1i164.48 (9)C10—O7—Yb1i99.6 (3)
O6—Yb1—Yb1i105.35 (9)Yb1—O7—Yb1i112.50 (13)
O3—Yb1—Yb1i109.17 (9)C10—O8—Yb1i90.8 (3)
O7—Yb1—Yb1i34.79 (8)C3—N1—C2105.0 (4)
O2W—Yb1—Yb1i82.69 (13)C3—N1—Ag2129.5 (4)
O1W—Yb1—Yb1i83.82 (10)C2—N1—Ag2123.7 (3)
O7i—Yb1—Yb1i32.71 (8)C3—N2—C4105.0 (4)
O8i—Yb1—Yb1i83.89 (8)C3—N2—Ag3iv127.3 (3)
C10i—Yb1—Yb1i58.56 (10)C4—N2—Ag3iv126.3 (3)
N4ii—Ag1—O5157.46 (14)C8—N3—C7105.3 (4)
N1—Ag2—O4ii159.80 (14)C8—N3—Ag3128.6 (3)
N1—Ag2—Ag3iii70.99 (11)C7—N3—Ag3125.5 (3)
O4ii—Ag2—Ag3iii100.58 (10)C8—N4—C9104.6 (4)
N2iv—Ag3—N3176.23 (17)C8—N4—Ag1vi123.2 (3)
N2iv—Ag3—Ag3iv98.55 (12)C9—N4—Ag1vi132.2 (3)
N3—Ag3—Ag3iv79.79 (12)Yb1—O1W—H1W116 (5)
N2iv—Ag3—Ag2v89.30 (12)Yb1—O1W—H2W126 (5)
N3—Ag3—Ag2v89.89 (11)H1W—O1W—H2W105 (6)
Ag3iv—Ag3—Ag2v140.588 (19)Yb1—O2W—H4W140 (6)
O1—C1—O2122.7 (5)Yb1—O2W—H3W128 (6)
O1—C1—C2118.0 (5)H4W—O2W—H3W90 (7)
O2—C1—C2119.2 (4)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O8iii0.82 (2)2.11 (5)2.751 (5)136 (6)
O1W—H2W···O2vii0.81 (2)2.03 (3)2.823 (5)165 (6)
O2W—H4W···O1viii0.81 (2)1.88 (4)2.634 (5)154 (8)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W⋯O8i 0.82 (2)2.11 (5)2.751 (5)136 (6)
O1W—H2W⋯O2ii 0.81 (2)2.03 (3)2.823 (5)165 (6)
O2W—H4W⋯O1iii 0.81 (2)1.88 (4)2.634 (5)154 (8)

Symmetry codes: (i) ; (ii) ; (iii) .

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