Literature DB >> 22904718

Diiodido{2-[(4-meth-oxy-phen-yl)imino-meth-yl]pyridine-κ(2)N,N'}zinc.

Sadegh Salehzadeh, Mehdi Khalaj, Saeed Dehghanpour.   

Abstract

In the title complex, [ZnI(2)(C(13)H(12)N(2)O)], the Zn(II) atom has a distorted tetra-hedral coordination. The organic ligand is bidentate, coordinating the Zn(II) atom via the two N atoms. The benzene and pyridine rings are oriented at a dihedral angle of 11.67 (9)°. In the crystal, weak C-H⋯I and C-H⋯O hydrogen bonds are observed, in addition to π-π stacking inter-actions, with a centroid-centroid distance of 3.72 (5) Å.

Entities:  

Year:  2012        PMID: 22904718      PMCID: PMC3414111          DOI: 10.1107/S1600536812030486

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the ligand, see: Dehghanpour et al. (2009 ▶). For related structures, see: Talei Bavil Olyai et al. (2008 ▶); Khalaj et al. (2008 ▶); Wriedt et al. (2008 ▶).

Experimental

Crystal data

[ZnI2(C13H12N2O)] M = 531.42 Triclinic, a = 8.0290 (15) Å b = 10.002 (2) Å c = 10.538 (2) Å α = 83.498 (4)° β = 80.208 (4)° γ = 71.441 (4)° V = 789.0 (3) Å3 Z = 2 Mo Kα radiation μ = 5.46 mm−1 T = 150 K 0.25 × 0.12 × 0.08 mm

Data collection

Bruker APEX DUO diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.591, T max = 0.746 6595 measured reflections 3584 independent reflections 3165 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.061 S = 1.03 3584 reflections 173 parameters H-atom parameters constrained Δρmax = 0.97 e Å−3 Δρmin = −0.96 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030486/br2207sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030486/br2207Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnI2(C13H12N2O)]Z = 2
Mr = 531.42F(000) = 496
Triclinic, P1Dx = 2.237 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0290 (15) ÅCell parameters from 4756 reflections
b = 10.002 (2) Åθ = 2.7–27.5°
c = 10.538 (2) ŵ = 5.46 mm1
α = 83.498 (4)°T = 150 K
β = 80.208 (4)°Needle, yellow
γ = 71.441 (4)°0.25 × 0.12 × 0.08 mm
V = 789.0 (3) Å3
Bruker APEX DUO diffractometer3584 independent reflections
Radiation source: fine-focus sealed tube3165 reflections with I > 2σ(I)
Bruker Triumph monochromatorRint = 0.019
φ and ω scansθmax = 27.6°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.591, Tmax = 0.746k = −12→12
6595 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0321P)2 + 0.2822P] where P = (Fo2 + 2Fc2)/3
3584 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.97 e Å3
0 restraintsΔρmin = −0.96 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.29826 (5)0.21887 (4)0.31555 (3)0.02060 (9)
I10.03469 (3)0.34732 (2)0.19749 (2)0.02706 (7)
I20.48121 (3)0.36778 (2)0.36178 (2)0.02624 (7)
O1−0.2104 (3)0.2079 (3)0.9260 (2)0.0298 (5)
N10.4611 (3)0.0328 (3)0.2380 (2)0.0209 (5)
N20.2355 (3)0.0735 (3)0.4600 (2)0.0181 (5)
C10.5851 (4)0.0129 (4)0.1337 (3)0.0272 (7)
H1A0.60420.09310.08330.033*
C20.6867 (4)−0.1210 (4)0.0967 (3)0.0298 (8)
H2A0.7753−0.13140.02310.036*
C30.6591 (4)−0.2385 (4)0.1666 (3)0.0296 (7)
H3A0.7263−0.33080.14140.035*
C40.5294 (4)−0.2188 (4)0.2758 (3)0.0271 (7)
H4A0.5066−0.29750.32650.033*
C50.4351 (4)−0.0822 (3)0.3085 (3)0.0194 (6)
C60.3046 (4)−0.0532 (3)0.4257 (3)0.0214 (6)
H6A0.2717−0.12830.47590.026*
C70.1168 (4)0.1062 (3)0.5786 (3)0.0182 (6)
C80.0968 (4)0.0023 (3)0.6749 (3)0.0222 (6)
H8A0.1596−0.09430.66200.027*
C9−0.0142 (4)0.0400 (3)0.7885 (3)0.0244 (7)
H9A−0.0283−0.03090.85370.029*
C10−0.1054 (4)0.1810 (3)0.8083 (3)0.0220 (6)
C11−0.0880 (4)0.2861 (3)0.7136 (3)0.0243 (7)
H11A−0.15210.38250.72620.029*
C120.0264 (4)0.2462 (3)0.5993 (3)0.0241 (7)
H12A0.04220.31700.53440.029*
C13−0.2999 (5)0.3525 (4)0.9528 (3)0.0327 (8)
H13A−0.36310.35731.04110.049*
H13B−0.38490.39510.89200.049*
H13C−0.21280.40410.94360.049*
U11U22U33U12U13U23
Zn10.02370 (17)0.01803 (19)0.01862 (18)−0.00642 (14)−0.00014 (13)0.00062 (14)
I10.02842 (11)0.02108 (12)0.03186 (13)−0.00595 (8)−0.00941 (9)0.00063 (9)
I20.03011 (12)0.02100 (12)0.02954 (12)−0.00861 (8)−0.00965 (8)0.00107 (9)
O10.0389 (13)0.0246 (13)0.0197 (12)−0.0077 (10)0.0096 (10)−0.0021 (10)
N10.0222 (12)0.0215 (14)0.0189 (12)−0.0063 (10)−0.0031 (10)−0.0017 (11)
N20.0190 (11)0.0183 (13)0.0164 (12)−0.0058 (10)−0.0023 (9)0.0018 (10)
C10.0308 (16)0.0309 (19)0.0207 (16)−0.0142 (14)0.0033 (13)−0.0015 (14)
C20.0252 (15)0.039 (2)0.0240 (17)−0.0089 (14)0.0051 (13)−0.0106 (15)
C30.0290 (16)0.0281 (19)0.0274 (18)−0.0010 (14)−0.0028 (13)−0.0086 (15)
C40.0333 (16)0.0208 (17)0.0245 (17)−0.0040 (13)−0.0052 (13)−0.0008 (13)
C50.0195 (13)0.0199 (16)0.0184 (14)−0.0052 (11)−0.0046 (11)0.0013 (12)
C60.0237 (14)0.0206 (16)0.0183 (15)−0.0060 (12)−0.0010 (11)−0.0004 (12)
C70.0177 (13)0.0200 (15)0.0165 (14)−0.0069 (11)−0.0013 (11)0.0014 (12)
C80.0256 (15)0.0164 (15)0.0226 (15)−0.0049 (12)−0.0022 (12)0.0010 (12)
C90.0283 (15)0.0204 (16)0.0225 (16)−0.0084 (13)0.0013 (12)0.0027 (13)
C100.0234 (14)0.0254 (17)0.0171 (14)−0.0092 (12)0.0003 (11)−0.0006 (13)
C110.0283 (15)0.0163 (15)0.0234 (16)−0.0029 (12)0.0013 (13)−0.0006 (13)
C120.0293 (15)0.0200 (16)0.0209 (15)−0.0085 (13)0.0021 (12)0.0023 (13)
C130.0432 (19)0.0264 (19)0.0227 (17)−0.0080 (15)0.0092 (14)−0.0058 (14)
Zn1—N12.067 (3)C4—H4A0.9500
Zn1—N22.095 (3)C5—C61.468 (4)
Zn1—I22.5326 (5)C6—H6A0.9500
Zn1—I12.5455 (5)C7—C121.380 (4)
O1—C101.377 (3)C7—C81.395 (4)
O1—C131.432 (4)C8—C91.376 (4)
N1—C11.338 (4)C8—H8A0.9500
N1—C51.351 (4)C9—C101.388 (4)
N2—C61.278 (4)C9—H9A0.9500
N2—C71.438 (4)C10—C111.389 (4)
C1—C21.388 (5)C11—C121.397 (4)
C1—H1A0.9500C11—H11A0.9500
C2—C31.373 (5)C12—H12A0.9500
C2—H2A0.9500C13—H13A0.9800
C3—C41.400 (5)C13—H13B0.9800
C3—H3A0.9500C13—H13C0.9800
C4—C51.385 (4)
N1—Zn1—N280.45 (10)N2—C6—C5119.7 (3)
N1—Zn1—I2110.55 (7)N2—C6—H6A120.1
N2—Zn1—I2118.95 (7)C5—C6—H6A120.1
N1—Zn1—I1114.61 (7)C12—C7—C8119.4 (3)
N2—Zn1—I1111.29 (7)C12—C7—N2118.2 (3)
I2—Zn1—I1116.02 (2)C8—C7—N2122.3 (3)
C10—O1—C13117.6 (3)C9—C8—C7119.9 (3)
C1—N1—C5118.3 (3)C9—C8—H8A120.1
C1—N1—Zn1129.6 (2)C7—C8—H8A120.1
C5—N1—Zn1112.07 (19)C8—C9—C10120.4 (3)
C6—N2—C7121.8 (3)C8—C9—H9A119.8
C6—N2—Zn1111.4 (2)C10—C9—H9A119.8
C7—N2—Zn1126.6 (2)O1—C10—C9115.9 (3)
N1—C1—C2122.1 (3)O1—C10—C11123.4 (3)
N1—C1—H1A118.9C9—C10—C11120.7 (3)
C2—C1—H1A118.9C10—C11—C12118.2 (3)
C3—C2—C1120.0 (3)C10—C11—H11A120.9
C3—C2—H2A120.0C12—C11—H11A120.9
C1—C2—H2A120.0C7—C12—C11121.4 (3)
C2—C3—C4118.2 (3)C7—C12—H12A119.3
C2—C3—H3A120.9C11—C12—H12A119.3
C4—C3—H3A120.9O1—C13—H13A109.5
C5—C4—C3118.7 (3)O1—C13—H13B109.5
C5—C4—H4A120.6H13A—C13—H13B109.5
C3—C4—H4A120.6O1—C13—H13C109.5
N1—C5—C4122.6 (3)H13A—C13—H13C109.5
N1—C5—C6115.5 (3)H13B—C13—H13C109.5
C4—C5—C6121.9 (3)
D—H···AD—HH···AD···AD—H···A
C6—H6A···I2i0.953.133.761 (3)125
C1—H1A···O1ii0.952.473.338 (4)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6A⋯I2i 0.953.133.761 (3)125
C1—H1A⋯O1ii 0.952.473.338 (4)152

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Di-2-pyridyl sulfide-κN,N')diiodidozinc(II).

Authors:  Mario Wriedt; Inke Jess; Christian Näther
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

3.  {2-[(2,5-Dimethyl-phen-yl)imino-methyl]pyridine-κN,N'}diiodidozinc(II).

Authors:  Mohamad Reza Talei Bavil Olyai; Saeed Dehghanpour; Bita Hoormehr; Fahimeh Gholami; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

4.  {2-[(4-Bromo-phen-yl)imino-meth-yl]pyridine-κN,N'}diiodidozinc(II).

Authors:  Mehdi Khalaj; Saeed Dehghanpour; Ali Mahmoudi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

5.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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