| Literature DB >> 22904704 |
Amir Shokooh Saljooghi, Hadi Amiri Rudbari, Francesco Nicolò, Maliheh Zahmati, Fatemeh Delavar Mendi, Hossein Eshtiagh-Hosseini, Masoud Mirzaei.
Abstract
The asymmetric unit of the title complex, (C(6)H(8)N)(2)[Cu(C(7)H(3)NO(4))(2)]·6H(2)O, contains half a copper(II)-dipicolinate complex located on a twofold rotation axis, one protonated aniline mol-ecule and three solvent water mol-ecules. The Cu(II) atom is coordinated by four O atoms and two N atoms from two dipicolinate ligands in a distorted octa-hedral environment. In the crystal, the components are linked into a three-dimensional framework by inter-molecular O-H⋯O and N-H⋯O inter-actions.Entities:
Year: 2012 PMID: 22904704 PMCID: PMC3414097 DOI: 10.1107/S1600536812028590
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C6H8N)2[Cu(C7H3NO4)2]·6H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9787 reflections |
| θ = 2.3–32.7° | |
| µ = 0.83 mm−1 | |
| β = 117.706 (2)° | Irregular, green |
| 0.44 × 0.36 × 0.35 mm | |
| Bruker APEXII CCD diffractometer | 5321 independent reflections |
| Radiation source: fine-focus sealed tube | 4990 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 32.7°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 48649 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5321 reflections | (Δ/σ)max = 0.001 |
| 213 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.55 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.5000 | 0.979382 (19) | 0.2500 | 0.02257 (5) | |
| O1 | 0.59158 (4) | 0.80292 (10) | 0.26847 (4) | 0.03298 (14) | |
| O2 | 0.43941 (4) | 1.15066 (10) | 0.28429 (4) | 0.03275 (14) | |
| O3 | 0.70644 (4) | 0.77108 (10) | 0.35839 (4) | 0.03315 (14) | |
| O4 | 0.43162 (4) | 1.20999 (11) | 0.39036 (4) | 0.03787 (16) | |
| N1 | 0.55834 (4) | 0.98045 (9) | 0.35855 (4) | 0.02101 (12) | |
| C1 | 0.64268 (4) | 0.81793 (11) | 0.33490 (5) | 0.02413 (14) | |
| C2 | 0.62266 (4) | 0.90375 (10) | 0.39060 (4) | 0.02198 (13) | |
| C3 | 0.66492 (5) | 0.90453 (12) | 0.46879 (5) | 0.02786 (15) | |
| H3 | 0.7102 | 0.8535 | 0.4911 | 0.033* | |
| C4 | 0.63852 (5) | 0.98284 (13) | 0.51321 (5) | 0.03126 (18) | |
| H4 | 0.6656 | 0.9822 | 0.5658 | 0.038* | |
| C5 | 0.57176 (5) | 1.06210 (12) | 0.47912 (5) | 0.02811 (16) | |
| H5 | 0.5534 | 1.1150 | 0.5082 | 0.034* | |
| C6 | 0.53317 (4) | 1.06049 (11) | 0.40074 (4) | 0.02196 (13) | |
| C7 | 0.46167 (4) | 1.14859 (11) | 0.35519 (5) | 0.02438 (14) | |
| N2 | 0.65628 (5) | 0.54403 (11) | 0.60233 (5) | 0.03183 (16) | |
| H2A | 0.6328 | 0.6190 | 0.6098 | 0.038* | |
| H2B | 0.6526 | 0.4490 | 0.6238 | 0.038* | |
| H2C | 0.7012 | 0.5780 | 0.6201 | 0.038* | |
| C8 | 0.63075 (5) | 0.51163 (11) | 0.52136 (6) | 0.02671 (15) | |
| C9 | 0.67563 (6) | 0.42455 (14) | 0.50001 (6) | 0.03540 (19) | |
| H9 | 0.7207 | 0.3871 | 0.5364 | 0.042* | |
| C10 | 0.65261 (7) | 0.39375 (16) | 0.42367 (7) | 0.0440 (2) | |
| H10 | 0.6826 | 0.3359 | 0.4087 | 0.053* | |
| C11 | 0.58577 (8) | 0.44806 (16) | 0.36981 (7) | 0.0442 (3) | |
| H11 | 0.5706 | 0.4266 | 0.3186 | 0.053* | |
| C12 | 0.54110 (7) | 0.53474 (16) | 0.39200 (7) | 0.0418 (2) | |
| H12 | 0.4959 | 0.5711 | 0.3556 | 0.050* | |
| C13 | 0.56340 (5) | 0.56767 (14) | 0.46834 (6) | 0.03397 (18) | |
| H13 | 0.5337 | 0.6262 | 0.4834 | 0.041* | |
| O5 | 0.29295 (4) | 0.17557 (11) | 0.19901 (5) | 0.03988 (17) | |
| H5A | 0.3387 | 0.1722 | 0.2247 | 0.060* | |
| H5B | 0.2852 | 0.2755 | 0.2092 | 0.060* | |
| O6 | 0.74953 (5) | 0.49186 (10) | 0.79362 (5) | 0.04002 (17) | |
| H6A | 0.7296 | 0.4169 | 0.8082 | 0.060* | |
| H6B | 0.7635 | 0.4372 | 0.7660 | 0.060* | |
| O7 | 0.37393 (5) | 0.76400 (11) | 0.34828 (4) | 0.03909 (16) | |
| H7A | 0.3829 | 0.7562 | 0.3108 | 0.059* | |
| H7B | 0.3414 | 0.8380 | 0.3387 | 0.059* |
| Cu1 | 0.01931 (7) | 0.02986 (8) | 0.01981 (7) | 0.000 | 0.01017 (5) | 0.000 |
| O1 | 0.0284 (3) | 0.0478 (4) | 0.0232 (3) | 0.0025 (3) | 0.0124 (2) | −0.0029 (3) |
| O2 | 0.0236 (3) | 0.0484 (4) | 0.0236 (3) | 0.0075 (3) | 0.0088 (2) | 0.0010 (3) |
| O3 | 0.0245 (3) | 0.0373 (4) | 0.0392 (3) | 0.0072 (3) | 0.0161 (3) | −0.0025 (3) |
| O4 | 0.0355 (3) | 0.0459 (4) | 0.0394 (4) | 0.0126 (3) | 0.0236 (3) | −0.0026 (3) |
| N1 | 0.0190 (3) | 0.0251 (3) | 0.0198 (3) | 0.0023 (2) | 0.0097 (2) | 0.0004 (2) |
| C1 | 0.0232 (3) | 0.0254 (3) | 0.0259 (3) | 0.0028 (3) | 0.0133 (3) | 0.0011 (3) |
| C2 | 0.0193 (3) | 0.0245 (3) | 0.0222 (3) | 0.0025 (2) | 0.0097 (2) | 0.0014 (2) |
| C3 | 0.0229 (3) | 0.0320 (4) | 0.0237 (3) | 0.0049 (3) | 0.0068 (3) | 0.0031 (3) |
| C4 | 0.0306 (4) | 0.0393 (5) | 0.0188 (3) | 0.0029 (3) | 0.0071 (3) | 0.0008 (3) |
| C5 | 0.0293 (4) | 0.0348 (4) | 0.0213 (3) | 0.0014 (3) | 0.0127 (3) | −0.0027 (3) |
| C6 | 0.0204 (3) | 0.0261 (3) | 0.0209 (3) | 0.0009 (3) | 0.0109 (3) | −0.0012 (3) |
| C7 | 0.0212 (3) | 0.0271 (4) | 0.0262 (3) | 0.0017 (3) | 0.0122 (3) | −0.0021 (3) |
| N2 | 0.0293 (4) | 0.0354 (4) | 0.0315 (4) | 0.0046 (3) | 0.0147 (3) | −0.0007 (3) |
| C8 | 0.0267 (4) | 0.0248 (3) | 0.0313 (4) | −0.0010 (3) | 0.0157 (3) | 0.0005 (3) |
| C9 | 0.0346 (5) | 0.0356 (5) | 0.0415 (5) | 0.0057 (4) | 0.0223 (4) | 0.0012 (4) |
| C10 | 0.0554 (7) | 0.0432 (6) | 0.0474 (6) | 0.0012 (5) | 0.0357 (5) | −0.0046 (5) |
| C11 | 0.0581 (7) | 0.0425 (6) | 0.0352 (5) | −0.0113 (5) | 0.0244 (5) | −0.0043 (4) |
| C12 | 0.0367 (5) | 0.0438 (6) | 0.0364 (5) | −0.0043 (4) | 0.0098 (4) | 0.0018 (4) |
| C13 | 0.0272 (4) | 0.0349 (4) | 0.0386 (5) | 0.0013 (3) | 0.0144 (4) | −0.0004 (4) |
| O5 | 0.0276 (3) | 0.0430 (4) | 0.0443 (4) | 0.0022 (3) | 0.0128 (3) | 0.0012 (3) |
| O6 | 0.0493 (5) | 0.0317 (4) | 0.0429 (4) | −0.0055 (3) | 0.0246 (4) | −0.0021 (3) |
| O7 | 0.0470 (4) | 0.0429 (4) | 0.0332 (3) | 0.0045 (3) | 0.0235 (3) | 0.0054 (3) |
| Cu1—N1 | 1.9232 (7) | N2—C8 | 1.4641 (13) |
| Cu1—N1i | 1.9232 (7) | N2—H2A | 0.8262 |
| Cu1—O2i | 2.1701 (7) | N2—H2B | 0.8855 |
| Cu1—O1 | 2.2577 (7) | N2—H2C | 0.8779 |
| Cu1—O2 | 2.1701 (7) | C8—C9 | 1.3807 (13) |
| Cu1—O1i | 2.2577 (7) | C8—C13 | 1.3823 (14) |
| O1—C1 | 1.2603 (10) | C9—C10 | 1.3841 (16) |
| O2—C7 | 1.2628 (10) | C9—H9 | 0.9300 |
| O3—C1 | 1.2467 (10) | C10—C11 | 1.376 (2) |
| O4—C7 | 1.2364 (10) | C10—H10 | 0.9300 |
| N1—C2 | 1.3365 (10) | C11—C12 | 1.3859 (19) |
| N1—C6 | 1.3389 (10) | C11—H11 | 0.9300 |
| C1—C2 | 1.5146 (11) | C12—C13 | 1.3897 (16) |
| C2—C3 | 1.3858 (11) | C12—H12 | 0.9300 |
| C3—C4 | 1.3865 (13) | C13—H13 | 0.9300 |
| C3—H3 | 0.9300 | O5—H5A | 0.8500 |
| C4—C5 | 1.3863 (13) | O5—H5B | 0.8500 |
| C4—H4 | 0.9300 | O6—H6A | 0.8502 |
| C5—C6 | 1.3823 (11) | O6—H6B | 0.8500 |
| C5—H5 | 0.9300 | O7—H7A | 0.8499 |
| C6—C7 | 1.5109 (11) | O7—H7B | 0.8500 |
| N1—Cu1—N1i | 179.49 (4) | C4—C5—H5 | 120.8 |
| N1—Cu1—O2i | 101.04 (3) | N1—C6—C5 | 121.15 (8) |
| N1i—Cu1—O2i | 78.64 (3) | N1—C6—C7 | 114.23 (7) |
| N1—Cu1—O2 | 78.64 (3) | C5—C6—C7 | 124.61 (7) |
| N1i—Cu1—O2 | 101.04 (3) | O4—C7—O2 | 127.31 (8) |
| O2i—Cu1—O2 | 102.72 (4) | O4—C7—C6 | 117.63 (8) |
| N1—Cu1—O1i | 103.46 (3) | O2—C7—C6 | 115.06 (7) |
| N1i—Cu1—O1i | 76.86 (3) | C8—N2—H2A | 112.3 |
| O2i—Cu1—O1i | 155.50 (2) | C8—N2—H2B | 108.2 |
| O2—Cu1—O1i | 82.08 (3) | H2A—N2—H2B | 109.3 |
| N1—Cu1—O1 | 76.86 (3) | C8—N2—H2C | 105.7 |
| N1i—Cu1—O1 | 103.46 (3) | H2A—N2—H2C | 108.8 |
| O2i—Cu1—O1 | 82.08 (3) | H2B—N2—H2C | 112.5 |
| O2—Cu1—O1 | 155.50 (2) | C9—C8—C13 | 121.51 (10) |
| O1i—Cu1—O1 | 103.61 (4) | C9—C8—N2 | 118.23 (9) |
| C1—O1—Cu1 | 110.73 (6) | C13—C8—N2 | 120.26 (8) |
| C7—O2—Cu1 | 112.14 (5) | C8—C9—C10 | 119.05 (10) |
| C2—N1—C6 | 121.17 (7) | C8—C9—H9 | 120.5 |
| C2—N1—Cu1 | 120.39 (5) | C10—C9—H9 | 120.5 |
| C6—N1—Cu1 | 118.44 (5) | C11—C10—C9 | 120.53 (11) |
| O3—C1—O1 | 127.06 (8) | C11—C10—H10 | 119.7 |
| O3—C1—C2 | 118.06 (7) | C9—C10—H10 | 119.7 |
| O1—C1—C2 | 114.87 (7) | C10—C11—C12 | 119.86 (11) |
| N1—C2—C3 | 120.56 (7) | C10—C11—H11 | 120.1 |
| N1—C2—C1 | 114.45 (7) | C12—C11—H11 | 120.1 |
| C3—C2—C1 | 124.99 (7) | C11—C12—C13 | 120.45 (11) |
| C2—C3—C4 | 118.79 (8) | C11—C12—H12 | 119.8 |
| C2—C3—H3 | 120.6 | C13—C12—H12 | 119.8 |
| C4—C3—H3 | 120.6 | C8—C13—C12 | 118.59 (10) |
| C5—C4—C3 | 119.95 (8) | C8—C13—H13 | 120.7 |
| C5—C4—H4 | 120.0 | C12—C13—H13 | 120.7 |
| C3—C4—H4 | 120.0 | H5A—O5—H5B | 99.9 |
| C6—C5—C4 | 118.33 (8) | H6A—O6—H6B | 103.6 |
| C6—C5—H5 | 120.8 | H7A—O7—H7B | 109.5 |
| N1—Cu1—O1—C1 | −14.29 (6) | O3—C1—C2—C3 | −13.90 (13) |
| N1i—Cu1—O1—C1 | 165.31 (6) | O1—C1—C2—C3 | 166.50 (9) |
| O2i—Cu1—O1—C1 | 89.06 (6) | N1—C2—C3—C4 | 1.50 (13) |
| O2—Cu1—O1—C1 | −14.29 (11) | C1—C2—C3—C4 | −177.53 (9) |
| O1i—Cu1—O1—C1 | −115.21 (7) | C2—C3—C4—C5 | −1.60 (15) |
| N1—Cu1—O2—C7 | −11.16 (6) | C3—C4—C5—C6 | −0.05 (15) |
| N1i—Cu1—O2—C7 | 169.24 (6) | C2—N1—C6—C5 | −2.07 (13) |
| O2i—Cu1—O2—C7 | −110.06 (7) | Cu1—N1—C6—C5 | 178.37 (7) |
| O1i—Cu1—O2—C7 | 94.37 (6) | C2—N1—C6—C7 | 176.68 (7) |
| O1—Cu1—O2—C7 | −11.16 (11) | Cu1—N1—C6—C7 | −2.87 (9) |
| O2i—Cu1—N1—C2 | −71.51 (7) | C4—C5—C6—N1 | 1.91 (14) |
| O2—Cu1—N1—C2 | −172.44 (7) | C4—C5—C6—C7 | −176.72 (9) |
| O1i—Cu1—N1—C2 | 108.66 (6) | Cu1—O2—C7—O4 | −167.46 (8) |
| O1—Cu1—N1—C2 | 7.56 (6) | Cu1—O2—C7—C6 | 12.58 (9) |
| O2i—Cu1—N1—C6 | 108.06 (6) | N1—C6—C7—O4 | 172.64 (8) |
| O2—Cu1—N1—C6 | 7.12 (6) | C5—C6—C7—O4 | −8.65 (13) |
| O1i—Cu1—N1—C6 | −71.77 (7) | N1—C6—C7—O2 | −7.39 (11) |
| O1—Cu1—N1—C6 | −172.88 (7) | C5—C6—C7—O2 | 171.32 (9) |
| Cu1—O1—C1—O3 | −162.04 (8) | C13—C8—C9—C10 | 0.37 (16) |
| Cu1—O1—C1—C2 | 17.52 (9) | N2—C8—C9—C10 | −179.56 (10) |
| C6—N1—C2—C3 | 0.33 (12) | C8—C9—C10—C11 | −0.45 (18) |
| Cu1—N1—C2—C3 | 179.88 (6) | C9—C10—C11—C12 | 0.19 (19) |
| C6—N1—C2—C1 | 179.46 (7) | C10—C11—C12—C13 | 0.16 (18) |
| Cu1—N1—C2—C1 | −0.99 (10) | C9—C8—C13—C12 | −0.03 (15) |
| O3—C1—C2—N1 | 167.02 (8) | N2—C8—C13—C12 | 179.90 (9) |
| O1—C1—C2—N1 | −12.58 (11) | C11—C12—C13—C8 | −0.24 (17) |
| H··· | ||||
| N2—H2 | 0.83 | 1.91 | 2.7267 (11) | 171 |
| N2—H2 | 0.89 | 1.93 | 2.8071 (12) | 168 |
| N2—H2 | 0.88 | 2.14 | 2.9842 (12) | 162 |
| O5—H5 | 0.85 | 1.88 | 2.732 | 176 |
| O5—H5 | 0.85 | 1.97 | 2.8026 (12) | 166 |
| O6—H6 | 0.85 | 1.97 | 2.8066 (11) | 167 |
| O6—H6 | 0.85 | 1.93 | 2.7760 (13) | 177 |
| O7—H7 | 0.85 | 1.92 | 2.750 | 164 |
| O7—H7 | 0.85 | 2.17 | 3.0083 (12) | 170 |
Selected bond lengths (Å)
| Cu1—N1 | 1.9232 (7) |
| Cu1—O1 | 2.2577 (7) |
| Cu1—O2 | 2.1701 (7) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.83 | 1.91 | 2.7267 (11) | 171 |
| N2—H2 | 0.89 | 1.93 | 2.8071 (12) | 168 |
| N2—H2 | 0.88 | 2.14 | 2.9842 (12) | 162 |
| O5—H5 | 0.85 | 1.88 | 2.732 | 176 |
| O5—H5 | 0.85 | 1.97 | 2.8026 (12) | 166 |
| O6—H6 | 0.85 | 1.97 | 2.8066 (11) | 167 |
| O6—H6 | 0.85 | 1.93 | 2.7760 (13) | 177 |
| O7—H7 | 0.85 | 1.92 | 2.750 | 164 |
| O7—H7 | 0.85 | 2.17 | 3.0083 (12) | 170 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .