Literature DB >> 22904704

Dianilinium bis-(pyridine-2,6-dicarboxyl-ato-κ(3)O(2),N,O(6))cuprate(II) hexa-hydrate.

Amir Shokooh Saljooghi, Hadi Amiri Rudbari, Francesco Nicolò, Maliheh Zahmati, Fatemeh Delavar Mendi, Hossein Eshtiagh-Hosseini, Masoud Mirzaei.   

Abstract

The asymmetric unit of the title complex, (C(6)H(8)N)(2)[Cu(C(7)H(3)NO(4))(2)]·6H(2)O, contains half a copper(II)-dipicolinate complex located on a twofold rotation axis, one protonated aniline mol-ecule and three solvent water mol-ecules. The Cu(II) atom is coordinated by four O atoms and two N atoms from two dipicolinate ligands in a distorted octa-hedral environment. In the crystal, the components are linked into a three-dimensional framework by inter-molecular O-H⋯O and N-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22904704      PMCID: PMC3414097          DOI: 10.1107/S1600536812028590

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal complexes formed by pyridine­dicarb­oxy­lic acids, see: Crans (2000 ▶); Wang et al. (2004 ▶); Park et al. (2007 ▶); Aghabozorg et al. (2008 ▶, 2011 ▶); Tabatabaee (2010 ▶).

Experimental

Crystal data

(C6H8N)2[Cu(C7H3NO4)2]·6H2O M = 690.11 Monoclinic, a = 20.9117 (6) Å b = 7.9115 (2) Å c = 19.8842 (5) Å β = 117.706 (2)° V = 2912.52 (13) Å3 Z = 4 Mo Kα radiation μ = 0.83 mm−1 T = 293 K 0.44 × 0.36 × 0.35 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.652, T max = 0.746 48649 measured reflections 5321 independent reflections 4990 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.073 S = 1.06 5321 reflections 213 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XPW (Siemens, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028590/vn2037sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028590/vn2037Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C6H8N)2[Cu(C7H3NO4)2]·6H2OF(000) = 1436
Mr = 690.11Dx = 1.574 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9787 reflections
a = 20.9117 (6) Åθ = 2.3–32.7°
b = 7.9115 (2) ŵ = 0.83 mm1
c = 19.8842 (5) ÅT = 293 K
β = 117.706 (2)°Irregular, green
V = 2912.52 (13) Å30.44 × 0.36 × 0.35 mm
Z = 4
Bruker APEXII CCD diffractometer5321 independent reflections
Radiation source: fine-focus sealed tube4990 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
φ and ω scansθmax = 32.7°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −31→31
Tmin = 0.652, Tmax = 0.746k = −12→12
48649 measured reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0415P)2 + 1.1609P] where P = (Fo2 + 2Fc2)/3
5321 reflections(Δ/σ)max = 0.001
213 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.55 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.979382 (19)0.25000.02257 (5)
O10.59158 (4)0.80292 (10)0.26847 (4)0.03298 (14)
O20.43941 (4)1.15066 (10)0.28429 (4)0.03275 (14)
O30.70644 (4)0.77108 (10)0.35839 (4)0.03315 (14)
O40.43162 (4)1.20999 (11)0.39036 (4)0.03787 (16)
N10.55834 (4)0.98045 (9)0.35855 (4)0.02101 (12)
C10.64268 (4)0.81793 (11)0.33490 (5)0.02413 (14)
C20.62266 (4)0.90375 (10)0.39060 (4)0.02198 (13)
C30.66492 (5)0.90453 (12)0.46879 (5)0.02786 (15)
H30.71020.85350.49110.033*
C40.63852 (5)0.98284 (13)0.51321 (5)0.03126 (18)
H40.66560.98220.56580.038*
C50.57176 (5)1.06210 (12)0.47912 (5)0.02811 (16)
H50.55341.11500.50820.034*
C60.53317 (4)1.06049 (11)0.40074 (4)0.02196 (13)
C70.46167 (4)1.14859 (11)0.35519 (5)0.02438 (14)
N20.65628 (5)0.54403 (11)0.60233 (5)0.03183 (16)
H2A0.63280.61900.60980.038*
H2B0.65260.44900.62380.038*
H2C0.70120.57800.62010.038*
C80.63075 (5)0.51163 (11)0.52136 (6)0.02671 (15)
C90.67563 (6)0.42455 (14)0.50001 (6)0.03540 (19)
H90.72070.38710.53640.042*
C100.65261 (7)0.39375 (16)0.42367 (7)0.0440 (2)
H100.68260.33590.40870.053*
C110.58577 (8)0.44806 (16)0.36981 (7)0.0442 (3)
H110.57060.42660.31860.053*
C120.54110 (7)0.53474 (16)0.39200 (7)0.0418 (2)
H120.49590.57110.35560.050*
C130.56340 (5)0.56767 (14)0.46834 (6)0.03397 (18)
H130.53370.62620.48340.041*
O50.29295 (4)0.17557 (11)0.19901 (5)0.03988 (17)
H5A0.33870.17220.22470.060*
H5B0.28520.27550.20920.060*
O60.74953 (5)0.49186 (10)0.79362 (5)0.04002 (17)
H6A0.72960.41690.80820.060*
H6B0.76350.43720.76600.060*
O70.37393 (5)0.76400 (11)0.34828 (4)0.03909 (16)
H7A0.38290.75620.31080.059*
H7B0.34140.83800.33870.059*
U11U22U33U12U13U23
Cu10.01931 (7)0.02986 (8)0.01981 (7)0.0000.01017 (5)0.000
O10.0284 (3)0.0478 (4)0.0232 (3)0.0025 (3)0.0124 (2)−0.0029 (3)
O20.0236 (3)0.0484 (4)0.0236 (3)0.0075 (3)0.0088 (2)0.0010 (3)
O30.0245 (3)0.0373 (4)0.0392 (3)0.0072 (3)0.0161 (3)−0.0025 (3)
O40.0355 (3)0.0459 (4)0.0394 (4)0.0126 (3)0.0236 (3)−0.0026 (3)
N10.0190 (3)0.0251 (3)0.0198 (3)0.0023 (2)0.0097 (2)0.0004 (2)
C10.0232 (3)0.0254 (3)0.0259 (3)0.0028 (3)0.0133 (3)0.0011 (3)
C20.0193 (3)0.0245 (3)0.0222 (3)0.0025 (2)0.0097 (2)0.0014 (2)
C30.0229 (3)0.0320 (4)0.0237 (3)0.0049 (3)0.0068 (3)0.0031 (3)
C40.0306 (4)0.0393 (5)0.0188 (3)0.0029 (3)0.0071 (3)0.0008 (3)
C50.0293 (4)0.0348 (4)0.0213 (3)0.0014 (3)0.0127 (3)−0.0027 (3)
C60.0204 (3)0.0261 (3)0.0209 (3)0.0009 (3)0.0109 (3)−0.0012 (3)
C70.0212 (3)0.0271 (4)0.0262 (3)0.0017 (3)0.0122 (3)−0.0021 (3)
N20.0293 (4)0.0354 (4)0.0315 (4)0.0046 (3)0.0147 (3)−0.0007 (3)
C80.0267 (4)0.0248 (3)0.0313 (4)−0.0010 (3)0.0157 (3)0.0005 (3)
C90.0346 (5)0.0356 (5)0.0415 (5)0.0057 (4)0.0223 (4)0.0012 (4)
C100.0554 (7)0.0432 (6)0.0474 (6)0.0012 (5)0.0357 (5)−0.0046 (5)
C110.0581 (7)0.0425 (6)0.0352 (5)−0.0113 (5)0.0244 (5)−0.0043 (4)
C120.0367 (5)0.0438 (6)0.0364 (5)−0.0043 (4)0.0098 (4)0.0018 (4)
C130.0272 (4)0.0349 (4)0.0386 (5)0.0013 (3)0.0144 (4)−0.0004 (4)
O50.0276 (3)0.0430 (4)0.0443 (4)0.0022 (3)0.0128 (3)0.0012 (3)
O60.0493 (5)0.0317 (4)0.0429 (4)−0.0055 (3)0.0246 (4)−0.0021 (3)
O70.0470 (4)0.0429 (4)0.0332 (3)0.0045 (3)0.0235 (3)0.0054 (3)
Cu1—N11.9232 (7)N2—C81.4641 (13)
Cu1—N1i1.9232 (7)N2—H2A0.8262
Cu1—O2i2.1701 (7)N2—H2B0.8855
Cu1—O12.2577 (7)N2—H2C0.8779
Cu1—O22.1701 (7)C8—C91.3807 (13)
Cu1—O1i2.2577 (7)C8—C131.3823 (14)
O1—C11.2603 (10)C9—C101.3841 (16)
O2—C71.2628 (10)C9—H90.9300
O3—C11.2467 (10)C10—C111.376 (2)
O4—C71.2364 (10)C10—H100.9300
N1—C21.3365 (10)C11—C121.3859 (19)
N1—C61.3389 (10)C11—H110.9300
C1—C21.5146 (11)C12—C131.3897 (16)
C2—C31.3858 (11)C12—H120.9300
C3—C41.3865 (13)C13—H130.9300
C3—H30.9300O5—H5A0.8500
C4—C51.3863 (13)O5—H5B0.8500
C4—H40.9300O6—H6A0.8502
C5—C61.3823 (11)O6—H6B0.8500
C5—H50.9300O7—H7A0.8499
C6—C71.5109 (11)O7—H7B0.8500
N1—Cu1—N1i179.49 (4)C4—C5—H5120.8
N1—Cu1—O2i101.04 (3)N1—C6—C5121.15 (8)
N1i—Cu1—O2i78.64 (3)N1—C6—C7114.23 (7)
N1—Cu1—O278.64 (3)C5—C6—C7124.61 (7)
N1i—Cu1—O2101.04 (3)O4—C7—O2127.31 (8)
O2i—Cu1—O2102.72 (4)O4—C7—C6117.63 (8)
N1—Cu1—O1i103.46 (3)O2—C7—C6115.06 (7)
N1i—Cu1—O1i76.86 (3)C8—N2—H2A112.3
O2i—Cu1—O1i155.50 (2)C8—N2—H2B108.2
O2—Cu1—O1i82.08 (3)H2A—N2—H2B109.3
N1—Cu1—O176.86 (3)C8—N2—H2C105.7
N1i—Cu1—O1103.46 (3)H2A—N2—H2C108.8
O2i—Cu1—O182.08 (3)H2B—N2—H2C112.5
O2—Cu1—O1155.50 (2)C9—C8—C13121.51 (10)
O1i—Cu1—O1103.61 (4)C9—C8—N2118.23 (9)
C1—O1—Cu1110.73 (6)C13—C8—N2120.26 (8)
C7—O2—Cu1112.14 (5)C8—C9—C10119.05 (10)
C2—N1—C6121.17 (7)C8—C9—H9120.5
C2—N1—Cu1120.39 (5)C10—C9—H9120.5
C6—N1—Cu1118.44 (5)C11—C10—C9120.53 (11)
O3—C1—O1127.06 (8)C11—C10—H10119.7
O3—C1—C2118.06 (7)C9—C10—H10119.7
O1—C1—C2114.87 (7)C10—C11—C12119.86 (11)
N1—C2—C3120.56 (7)C10—C11—H11120.1
N1—C2—C1114.45 (7)C12—C11—H11120.1
C3—C2—C1124.99 (7)C11—C12—C13120.45 (11)
C2—C3—C4118.79 (8)C11—C12—H12119.8
C2—C3—H3120.6C13—C12—H12119.8
C4—C3—H3120.6C8—C13—C12118.59 (10)
C5—C4—C3119.95 (8)C8—C13—H13120.7
C5—C4—H4120.0C12—C13—H13120.7
C3—C4—H4120.0H5A—O5—H5B99.9
C6—C5—C4118.33 (8)H6A—O6—H6B103.6
C6—C5—H5120.8H7A—O7—H7B109.5
N1—Cu1—O1—C1−14.29 (6)O3—C1—C2—C3−13.90 (13)
N1i—Cu1—O1—C1165.31 (6)O1—C1—C2—C3166.50 (9)
O2i—Cu1—O1—C189.06 (6)N1—C2—C3—C41.50 (13)
O2—Cu1—O1—C1−14.29 (11)C1—C2—C3—C4−177.53 (9)
O1i—Cu1—O1—C1−115.21 (7)C2—C3—C4—C5−1.60 (15)
N1—Cu1—O2—C7−11.16 (6)C3—C4—C5—C6−0.05 (15)
N1i—Cu1—O2—C7169.24 (6)C2—N1—C6—C5−2.07 (13)
O2i—Cu1—O2—C7−110.06 (7)Cu1—N1—C6—C5178.37 (7)
O1i—Cu1—O2—C794.37 (6)C2—N1—C6—C7176.68 (7)
O1—Cu1—O2—C7−11.16 (11)Cu1—N1—C6—C7−2.87 (9)
O2i—Cu1—N1—C2−71.51 (7)C4—C5—C6—N11.91 (14)
O2—Cu1—N1—C2−172.44 (7)C4—C5—C6—C7−176.72 (9)
O1i—Cu1—N1—C2108.66 (6)Cu1—O2—C7—O4−167.46 (8)
O1—Cu1—N1—C27.56 (6)Cu1—O2—C7—C612.58 (9)
O2i—Cu1—N1—C6108.06 (6)N1—C6—C7—O4172.64 (8)
O2—Cu1—N1—C67.12 (6)C5—C6—C7—O4−8.65 (13)
O1i—Cu1—N1—C6−71.77 (7)N1—C6—C7—O2−7.39 (11)
O1—Cu1—N1—C6−172.88 (7)C5—C6—C7—O2171.32 (9)
Cu1—O1—C1—O3−162.04 (8)C13—C8—C9—C100.37 (16)
Cu1—O1—C1—C217.52 (9)N2—C8—C9—C10−179.56 (10)
C6—N1—C2—C30.33 (12)C8—C9—C10—C11−0.45 (18)
Cu1—N1—C2—C3179.88 (6)C9—C10—C11—C120.19 (19)
C6—N1—C2—C1179.46 (7)C10—C11—C12—C130.16 (18)
Cu1—N1—C2—C1−0.99 (10)C9—C8—C13—C12−0.03 (15)
O3—C1—C2—N1167.02 (8)N2—C8—C13—C12179.90 (9)
O1—C1—C2—N1−12.58 (11)C11—C12—C13—C8−0.24 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O4ii0.831.912.7267 (11)171
N2—H2B···O7iii0.891.932.8071 (12)168
N2—H2C···O3iv0.882.142.9842 (12)162
O5—H5A···O2v0.851.882.732176
O5—H5B···O6iii0.851.972.8026 (12)166
O6—H6A···O3vi0.851.972.8066 (11)167
O6—H6B···O5vii0.851.932.7760 (13)177
O7—H7A···O1i0.851.922.750164
O7—H7B···O6viii0.852.173.0083 (12)170
Table 1

Selected bond lengths (Å)

Cu1—N11.9232 (7)
Cu1—O12.2577 (7)
Cu1—O22.1701 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O4i 0.831.912.7267 (11)171
N2—H2B⋯O7ii 0.891.932.8071 (12)168
N2—H2C⋯O3iii 0.882.142.9842 (12)162
O5—H5A⋯O2iv 0.851.882.732176
O5—H5B⋯O6ii 0.851.972.8026 (12)166
O6—H6A⋯O3v 0.851.972.8066 (11)167
O6—H6B⋯O5vi 0.851.932.7760 (13)177
O7—H7A⋯O1vii 0.851.922.750164
O7—H7B⋯O6viii 0.852.173.0083 (12)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

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