Literature DB >> 22899100

Vibrationally assisted electron transfer mechanism of olfaction: myth or reality?

Ilia A Solov'yov1, Po-Yao Chang, Klaus Schulten.   

Abstract

Smell is a vital sense for animals. The mainstream explanation of smell is based on recognition of the odorant molecules through characteristics of their surface, e.g., shape, but certain experiments suggest that such recognition is complemented by recognition of vibrational modes. According to this suggestion an olfactory receptor is activated by electron transfer assisted through odorant vibrational excitation. The hundreds to thousands of different olfactory receptors in an animal recognize odorants over a discriminant landscape with surface properties and vibrational frequencies as the two major dimensions. In the present paper we introduce the vibrationally assisted mechanism of olfaction and demonstrate for several odorants that, indeed, a strong enhancement of an electron tunneling rate due to odorant vibrations can arise. We discuss in this regard the influence of odorant deuteration and explain, thereby, recent experiments performed on Drosophila melanogaster. Our demonstration is based on known physical properties of biological electron transfer and on ab initio calculations on odorants carried out for the purpose of the present study. We identify a range of physical characteristics which olfactory receptors and odorants must obey for the vibrationally assisted electron transfer mechanism to function. We argue that the stated characteristics are feasible for realistic olfactory receptors, noting, though, that the receptor structure presently is still unknown, but can be studied through homology modeling.

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Year:  2012        PMID: 22899100      PMCID: PMC3478898          DOI: 10.1039/c2cp41436h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  31 in total

1.  Molecular mechanisms underlying differential odor responses of a mouse olfactory receptor.

Authors:  W B Floriano; N Vaidehi; W A Goddard; M S Singer; G M Shepherd
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

2.  Is the olfactory receptor a metalloprotein?

Authors:  Jiangyun Wang; Zaida A Luthey-Schulten; Kenneth S Suslick
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-27       Impact factor: 11.205

3.  Prediction of a ligand-binding niche within a human olfactory receptor by combining site-directed mutagenesis with dynamic homology modeling.

Authors:  Lian Gelis; Steffen Wolf; Hanns Hatt; Eva M Neuhaus; Klaus Gerwert
Journal:  Angew Chem Int Ed Engl       Date:  2011-12-05       Impact factor: 15.336

Review 4.  Correlation of electron transfer rate in photosynthetic reaction centers with intraprotein dielectric properties.

Authors:  Sergey K Chamorovsky; Dmitry A Cherepanov; Constantin S Chamorovsky; Alexey Yu Semenov
Journal:  Biochim Biophys Acta       Date:  2007-01-23

5.  High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.

Authors:  Vadim Cherezov; Daniel M Rosenbaum; Michael A Hanson; Søren G F Rasmussen; Foon Sun Thian; Tong Sun Kobilka; Hee-Jung Choi; Peter Kuhn; William I Weis; Brian K Kobilka; Raymond C Stevens
Journal:  Science       Date:  2007-10-25       Impact factor: 47.728

6.  What is the best DFT functional for vibronic calculations? A comparison of the calculated vibronic structure of the S1-S0 transition of phenylacetylene with cavity ringdown band intensities.

Authors:  Gary V Lopez; Chih-Hsuan Chang; Philip M Johnson; Gregory E Hall; Trevor J Sears; Beatrice Markiewicz; Mariana Milan; Alexey Teslja
Journal:  J Phys Chem A       Date:  2012-06-12       Impact factor: 2.781

7.  Crystal structure of the ligand-free G-protein-coupled receptor opsin.

Authors:  Jung Hee Park; Patrick Scheerer; Klaus Peter Hofmann; Hui-Woog Choe; Oliver Peter Ernst
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

8.  Automatic modeling of mammalian olfactory receptors and docking of odorants.

Authors:  Guillaume Launay; Stéphane Téletchéa; Fallou Wade; Edith Pajot-Augy; Jean-François Gibrat; Guenhaël Sanz
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  The human olfactory receptor repertoire.

Authors:  S Zozulya; F Echeverri; T Nguyen
Journal:  Genome Biol       Date:  2001-06-01       Impact factor: 13.583

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  23 in total

1.  Honeybees (Apis mellifera) learn to discriminate the smell of organic compounds from their respective deuterated isotopomers.

Authors:  Wulfila Gronenberg; Ajay Raikhelkar; Eric Abshire; Jennifer Stevens; Eric Epstein; Karin Loyola; Michael Rauscher; Stephen Buchmann
Journal:  Proc Biol Sci       Date:  2014-01-22       Impact factor: 5.349

2.  Implausibility of the vibrational theory of olfaction.

Authors:  Eric Block; Seogjoo Jang; Hiroaki Matsunami; Sivakumar Sekharan; Bérénice Dethier; Mehmed Z Ertem; Sivaji Gundala; Yi Pan; Shengju Li; Zhen Li; Stephene N Lodge; Mehmet Ozbil; Huihong Jiang; Sonia F Penalba; Victor S Batista; Hanyi Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-21       Impact factor: 11.205

Review 3.  Quantum effects in biology: golden rule in enzymes, olfaction, photosynthesis and magnetodetection.

Authors:  Jennifer C Brookes
Journal:  Proc Math Phys Eng Sci       Date:  2017-05-31       Impact factor: 2.704

4.  Experimental evaluation of the generalized vibrational theory of G protein-coupled receptor activation.

Authors:  Ross D Hoehn; David E Nichols; John D McCorvy; Hartmut Neven; Sabre Kais
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-12       Impact factor: 11.205

5.  Neuroreceptor activation by vibration-assisted tunneling.

Authors:  Ross D Hoehn; David Nichols; Hartmut Neven; Sabre Kais
Journal:  Sci Rep       Date:  2015-04-24       Impact factor: 4.379

6.  The Potential of 13C Isotopomers as a Test for the Vibrational Theory of Olfactory Sense Recognition.

Authors:  Karel D Klika
Journal:  ISRN Org Chem       Date:  2013-05-26

7.  Basis for a neuronal version of Grover's quantum algorithm.

Authors:  Kevin B Clark
Journal:  Front Mol Neurosci       Date:  2014-04-17       Impact factor: 5.639

8.  Differential Odour Coding of Isotopomers in the Honeybee Brain.

Authors:  Marco Paoli; Andrea Anesi; Renzo Antolini; Graziano Guella; Giorgio Vallortigara; Albrecht Haase
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

9.  Molecular vibration-sensing component in human olfaction.

Authors:  Simon Gane; Dimitris Georganakis; Klio Maniati; Manolis Vamvakias; Nikitas Ragoussis; Efthimios M C Skoulakis; Luca Turin
Journal:  PLoS One       Date:  2013-01-25       Impact factor: 3.240

Review 10.  The swipe card model of odorant recognition.

Authors:  Jennifer C Brookes; Andrew P Horsfield; A Marshall Stoneham
Journal:  Sensors (Basel)       Date:  2012-11-12       Impact factor: 3.576

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