Literature DB >> 22898966

PITRE: software for phase-sensitive X-ray image processing and tomography reconstruction.

Rong Chang Chen1, Diego Dreossi, Lucia Mancini, Ralf Menk, Luigi Rigon, Ti Qiao Xiao, Renata Longo.   

Abstract

Synchrotron-radiation computed tomography has been applied in many research fields. Here, PITRE (Phase-sensitive X-ray Image processing and Tomography REconstruction) and PITRE_BM (PITRE Batch Manager) are presented. PITRE supports phase retrieval for propagation-based phase-contrast imaging/tomography (PPCI/PPCT), extracts apparent absorption, refractive and scattering information of diffraction enhanced imaging (DEI), and allows parallel-beam tomography reconstruction for conventional absorption CT data and for PPCT phase retrieved and DEI-CT extracted information. PITRE_BM is a batch processing manager for PITRE: it executes a series of tasks, created via PITRE, without manual intervention. Both PITRE and PITRE_BM are coded in Interactive Data Language (IDL), and have a user-friendly graphical user interface. They are freeware and can run on Microsoft Windows systems via IDL Virtual Machine, which can be downloaded for free and does not require a license. The data-processing principle and some examples of application will be presented.

Mesh:

Year:  2012        PMID: 22898966     DOI: 10.1107/S0909049512029731

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  31 in total

1.  Optimization of tomographic reconstruction workflows on geographically distributed resources.

Authors:  Tekin Bicer; Dogˇa Gürsoy; Rajkumar Kettimuthu; Francesco De Carlo; Ian T Foster
Journal:  J Synchrotron Radiat       Date:  2016-06-15       Impact factor: 2.616

2.  Periodic microstructures of blood capillaries revealed by synchrotron X-ray multi-resolution microscopic analysis.

Authors:  Shengkun Yao; Yunbing Zong; Xu Huang; Yang Liu; Ningqiang Gong; Jianhua Zhang; Ziqing Li; Feng Cao; Xiangcheng Wang; Xing-Jie Liang; Huaidong Jiang
Journal:  Biomed Opt Express       Date:  2017-11-30       Impact factor: 3.732

3.  Three-dimensional visualization of microvasculature from few-projection data using a novel CT reconstruction algorithm for propagation-based X-ray phase-contrast imaging.

Authors:  Yuqing Zhao; Dongjiang Ji; Yimin Li; Xinyan Zhao; Wenjuan Lv; Xiaohong Xin; Shuo Han; Chunhong Hu
Journal:  Biomed Opt Express       Date:  2019-12-20       Impact factor: 3.732

4.  Assessment of fibrotic tissue and microvascular architecture by in-line phase-contrast imaging in a mouse model of liver fibrosis.

Authors:  Yi Fu; Hao-Jie Peng; Xi Zhang; Wei-Jun Peng; Jiong Wu; Sheng-Ping Wang; Min Du; Rui-Min Li
Journal:  Eur Radiol       Date:  2016-01-19       Impact factor: 5.315

5.  Synchrotron Radiation-Based Three-Dimensional Visualization of Angioarchitectural Remodeling in Hippocampus of Epileptic Rats.

Authors:  Pan Gu; Zi-Hao Xu; Yu-Ze Cao; Sheng-Hui Liao; Qian-Fang Deng; Xian-Zhen Yin; Zhuo-Lu Wang; Zhuo-Hui Chen; Xin-Hang Hu; Hui Wang; Li-Zhi Li; Shi-Xin Liu; Hui Ding; Shu-Peng Shi; Hong-Lei Li; Ti-Qiao Xiao; Bo Xiao; Meng-Qi Zhang
Journal:  Neurosci Bull       Date:  2019-12-10       Impact factor: 5.203

6.  Characterization of microvessels and parenchyma in in-line phase contrast imaging CT: healthy liver, cirrhosis and hepatocellular carcinoma.

Authors:  Jinghao Duan; Chunhong Hu; Qingtao Qiu; Jing Zhang; Huipeng Meng; Keqiang Wang; Huajiang Dong; Hong Wei; Yong Yin
Journal:  Quant Imaging Med Surg       Date:  2019-06

7.  Use of the volume-averaged Murray's deviation method for the characterization of branching geometry in liver fibrosis: a preliminary study on vascular circulation.

Authors:  Wenjuan Lv; Jianbo Jian; Jingyi Liu; Xinyan Zhao; Xiaohong Xin; Chunhong Hu
Journal:  Quant Imaging Med Surg       Date:  2022-02

8.  Hummingbird-sized dinosaur from the Cretaceous period of Myanmar.

Authors:  Lida Xing; Jingmai K O'Connor; Lars Schmitz; Gang Li; Luis M Chiappe; Ryan C McKellar; Qiru Yi
Journal:  Nature       Date:  2020-03-11       Impact factor: 69.504

9.  Factors influencing real time internal structural visualization and dynamic process monitoring in plants using synchrotron-based phase contrast X-ray imaging.

Authors:  Chithra Karunakaran; Rachid Lahlali; Ning Zhu; Adam M Webb; Marina Schmidt; Kyle Fransishyn; George Belev; Tomasz Wysokinski; Jeremy Olson; David M L Cooper; Emil Hallin
Journal:  Sci Rep       Date:  2015-07-17       Impact factor: 4.379

10.  Three-dimensional visualization of the microvasculature of bile duct ligation-induced liver fibrosis in rats by x-ray phase-contrast imaging computed tomography.

Authors:  Ruijiao Xuan; Xinyan Zhao; Doudou Hu; Jianbo Jian; Tailing Wang; Chunhong Hu
Journal:  Sci Rep       Date:  2015-07-27       Impact factor: 4.379

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