Literature DB >> 22897261

A generalized many-body expansion and a unified view of fragment-based methods in electronic structure theory.

Ryan M Richard1, John M Herbert.   

Abstract

Fragment-based quantum chemistry methods are a promising route towards massively parallel electronic structure calculations in large systems. Unfortunately, the literature on this topic consists of a bewildering array of different methods, with no clear guiding principles to choose amongst them. Here, we introduce a conceptual framework that unifies many of these ostensibly disparate approaches. The common framework is based upon an approximate supersystem energy formula for a collection of intersecting (i.e., overlapping) fragments. This formula generalizes the traditional many-body expansion to cases where the "bodies" (fragments) share some nuclei in common, and reduces to the traditional many-body expansion for non-overlapping fragments. We illustrate how numerous fragment-based methods fit within this framework. Preliminary applications to molecular and ionic clusters suggest that two-body methods in which dimers are constructed from intersecting fragments may be a route to achieve very high accuracy in fragment-based calculations.

Year:  2012        PMID: 22897261     DOI: 10.1063/1.4742816

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

2.  Analysis of the Errors in the Electrostatically Embedded Many-Body Expansion of the Energy and the Correlation Energy for Zn and Cd Coordination Complexes with Five and Six Ligands and Use of the Analysis to Develop a Generally Successful Fragmentation Strategy.

Authors:  Elbek K Kurbanov; Hannah R Leverentz; Donald G Truhlar; Elizabeth A Amin
Journal:  J Chem Theory Comput       Date:  2013-06-11       Impact factor: 6.006

Review 3.  Advanced Potential Energy Surfaces for Molecular Simulation.

Authors:  Alex Albaugh; Henry A Boateng; Richard T Bradshaw; Omar N Demerdash; Jacek Dziedzic; Yuezhi Mao; Daniel T Margul; Jason Swails; Qiao Zeng; David A Case; Peter Eastman; Lee-Ping Wang; Jonathan W Essex; Martin Head-Gordon; Vijay S Pande; Jay W Ponder; Yihan Shao; Chris-Kriton Skylaris; Ilian T Todorov; Mark E Tuckerman; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2016-09-22       Impact factor: 3.466

Review 4.  Computational and data driven molecular material design assisted by low scaling quantum mechanics calculations and machine learning.

Authors:  Wei Li; Haibo Ma; Shuhua Li; Jing Ma
Journal:  Chem Sci       Date:  2021-11-08       Impact factor: 9.825

5.  Linear-Scaling Systematic Molecular Fragmentation Approach for Perturbation Theory and Coupled-Cluster Methods.

Authors:  Uğur Bozkaya; Betül Ermiş
Journal:  J Chem Theory Comput       Date:  2022-08-16       Impact factor: 6.578

6.  Parametrization of an Orbital-Based Linear-Scaling Quantum Force Field for Noncovalent Interactions.

Authors:  Timothy J Giese; Haoyuan Chen; Ming Huang; Darrin M York
Journal:  J Chem Theory Comput       Date:  2014-02-11       Impact factor: 6.006

7.  Using quantum mechanical approaches to study biological systems.

Authors:  Kenneth M Merz
Journal:  Acc Chem Res       Date:  2014-06-06       Impact factor: 22.384

8.  Water Triggers Hydrogen-Bond-Network Reshaping in the Glycoaldehyde Dimer.

Authors:  Cristóbal Pérez; Amanda L Steber; Berhane Temelso; Zbigniew Kisiel; Melanie Schnell
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-20       Impact factor: 15.336

  8 in total

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