Literature DB >> 22895165

Selection of key ambient particulate variables for epidemiological studies - applying cluster and heatmap analyses as tools for data reduction.

Jianwei Gu1, Mike Pitz, Susanne Breitner, Wolfram Birmili, Stephanie von Klot, Alexandra Schneider, Jens Soentgen, Armin Reller, Annette Peters, Josef Cyrys.   

Abstract

The success of epidemiological studies depends on the use of appropriate exposure variables. The purpose of this study is to extract a relatively small selection of variables characterizing ambient particulate matter from a large measurement data set. The original data set comprised a total of 96 particulate matter variables that have been continuously measured since 2004 at an urban background aerosol monitoring site in the city of Augsburg, Germany. Many of the original variables were derived from measured particle size distribution (PSD) across the particle diameter range 3 nm to 10 μm, including size-segregated particle number concentration, particle length concentration, particle surface concentration and particle mass concentration. The data set was complemented by integral aerosol variables. These variables were measured by independent instruments, including black carbon, sulfate, particle active surface concentration and particle length concentration. It is obvious that such a large number of measured variables cannot be used in health effect analyses simultaneously. The aim of this study is a pre-screening and a selection of the key variables that will be used as input in forthcoming epidemiological studies. In this study, we present two methods of parameter selection and apply them to data from a two-year period from 2007 to 2008. We used the agglomerative hierarchical cluster method to find groups of similar variables. In total, we selected 15 key variables from 9 clusters which are recommended for epidemiological analyses. We also applied a two-dimensional visualization technique called "heatmap" analysis to the Spearman correlation matrix. 12 key variables were selected using this method. Moreover, the positive matrix factorization (PMF) method was applied to the PSD data to characterize the possible particle sources. Correlations between the variables and PMF factors were used to interpret the meaning of the cluster and the heatmap analyses.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22895165     DOI: 10.1016/j.scitotenv.2012.07.040

Source DB:  PubMed          Journal:  Sci Total Environ        ISSN: 0048-9697            Impact factor:   7.963


  5 in total

1.  Comparison of the application of B-mode and strain elastography ultrasound in the estimation of lymph node metastasis of papillary thyroid carcinoma based on a radiomics approach.

Authors:  Tongtong Liu; Xifeng Ge; Jinhua Yu; Yi Guo; Yuanyuan Wang; Wenping Wang; Ligang Cui
Journal:  Int J Comput Assist Radiol Surg       Date:  2018-06-21       Impact factor: 2.924

2.  Analysing the health effects of simultaneous exposure to physical and chemical properties of airborne particles.

Authors:  Monica Pirani; Nicky Best; Marta Blangiardo; Silvia Liverani; Richard W Atkinson; Gary W Fuller
Journal:  Environ Int       Date:  2015-03-19       Impact factor: 9.621

3.  Prediction of Lymph Node Metastasis in Patients With Papillary Thyroid Carcinoma: A Radiomics Method Based on Preoperative Ultrasound Images.

Authors:  Tongtong Liu; Shichong Zhou; Jinhua Yu; Yi Guo; Yuanyuan Wang; Jin Zhou; Cai Chang
Journal:  Technol Cancer Res Treat       Date:  2019-01-01

4.  Hourly Exposure to Ultrafine Particle Metrics and the Onset of Myocardial Infarction in Augsburg, Germany.

Authors:  Kai Chen; Alexandra Schneider; Josef Cyrys; Kathrin Wolf; Christa Meisinger; Margit Heier; Wolfgang von Scheidt; Bernhard Kuch; Mike Pitz; Annette Peters; Susanne Breitner
Journal:  Environ Health Perspect       Date:  2020-01-15       Impact factor: 9.031

5.  Temporal Patterns of Larval Fish Occurrence in a Large Subtropical River.

Authors:  Fangmin Shuai; Xinhui Li; Yuefei Li; Jie Li; Jiping Yang; Sovan Lek
Journal:  PLoS One       Date:  2016-01-13       Impact factor: 3.240

  5 in total

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