Literature DB >> 22894336

Quantifying the rebinding effect in multivalent chemical ligand-receptor systems.

Marcus Weber1, Alexander Bujotzek, Rainer Haag.   

Abstract

Multivalent ligand-receptor systems often show an enhancement in binding compared to the constituent monovalent systems. This "cooperativity effect" is often attributed to the favorable spatial preorganisation of the ligands by the connecting spacer that leads to a reduction of entropy loss at ligand binding. A different factor that has been proposed to contribute to the cooperativity effect is "rebinding": As soon as a single ligand-receptor complex dissociates, the presence of another ligand "on coat-tails" will increase the probability of another binding event, which in turn will drive the system to a state where all ligands are bound. In this article, we derive a first quantitative description of the rebinding effect. In order to model the inherent memory effect of a spacer-connected system, we pursue a mathematical approach based on Markov state models and conformation dynamics. The theoretical investigations are illustrated by studying different prototypic ligand-receptor systems.

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Year:  2012        PMID: 22894336     DOI: 10.1063/1.4739501

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  13 in total

1.  Simplified models for heterobivalent ligand binding: when are they applicable and which are the factors that affect their target residence time.

Authors:  Georges Vauquelin
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2013-06-28       Impact factor: 3.000

Review 2.  [Medicine from the computer].

Authors:  K Andrae; V Durmaz; K Fackeldey; O Scharkoi; M Weber
Journal:  Anaesthesist       Date:  2013-07       Impact factor: 1.041

3.  [Medicine from the computer].

Authors:  K Andrae; V Durmaz; K Fackeldey; O Scharkoi; M Weber
Journal:  Schmerz       Date:  2013-08       Impact factor: 1.107

4.  [Medicine from the computer].

Authors:  K Andrae; V Durmaz; K Fackeldey; O Scharkoi; M Weber
Journal:  Z Rheumatol       Date:  2013-10       Impact factor: 1.372

5.  PNA-Based Multivalent Scaffolds Activate the Dopamine D2 Receptor.

Authors:  Andrew V Dix; Jennie L Conroy; Kara M George Rosenker; David R Sibley; Daniel H Appella
Journal:  ACS Med Chem Lett       Date:  2015-03-13       Impact factor: 4.345

6.  'Partial' competition of heterobivalent ligand binding may be mistaken for allosteric interactions: a comparison of different target interaction models.

Authors:  Georges Vauquelin; David Hall; Steven J Charlton
Journal:  Br J Pharmacol       Date:  2015-03-17       Impact factor: 8.739

Review 7.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

Authors:  Tatiana Maximova; Ryan Moffatt; Buyong Ma; Ruth Nussinov; Amarda Shehu
Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475

8.  Mechanisms of noncanonical binding dynamics in multivalent protein-protein interactions.

Authors:  Wesley J Errington; Bence Bruncsics; Casim A Sarkar
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

9.  Thermodynamic characterization of the multivalent interactions underlying rapid and selective translocation through the nuclear pore complex.

Authors:  Ryo Hayama; Samuel Sparks; Lee M Hecht; Kaushik Dutta; Jerome M Karp; Christina M Cabana; Michael P Rout; David Cowburn
Journal:  J Biol Chem       Date:  2018-01-26       Impact factor: 5.157

Review 10.  Markov state models of biomolecular conformational dynamics.

Authors:  John D Chodera; Frank Noé
Journal:  Curr Opin Struct Biol       Date:  2014-05-16       Impact factor: 6.809

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