Literature DB >> 22891657

A likelihood-based comparison of population histories in a parasitoid guild.

Konrad Lohse1, Nicholas H Barton, George Melika, Graham N Stone.   

Abstract

Little is known about the stability of trophic relationships in complex natural communities over evolutionary timescales. Here, we use sequence data from 18 nuclear loci to reconstruct and compare the intraspecific histories of major Pleistocene refugial populations in the Middle East, the Balkans and Iberia in a guild of four Chalcid parasitoids (Cecidostiba fungosa, Cecidostiba semifascia, Hobbya stenonota and Mesopolobus amaenus) all attacking Cynipid oak galls. We develop a likelihood method to numerically estimate models of divergence between three populations from multilocus data. We investigate the power of this framework on simulated data, and-using triplet alignments of intronic loci-quantify the support for all possible divergence relationships between refugial populations in the four parasitoids. Although an East to West order of population divergence has highest support in all but one species, we cannot rule out alternative population tree topologies. Comparing the estimated times of population splits between species, we find that one species, M. amaenus, has a significantly older history than the rest of the guild and must have arrived in central Europe at least one glacial cycle prior to other guild members. This suggests that although all four species may share a common origin in the East, they expanded westwards into Europe at different times.
© 2012 Blackwell Publishing Ltd.

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Year:  2012        PMID: 22891657     DOI: 10.1111/j.1365-294X.2012.05700.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  8 in total

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Authors:  Brett R Riddle
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

3.  Neandertal admixture in Eurasia confirmed by maximum-likelihood analysis of three genomes.

Authors:  Konrad Lohse; Laurent A F Frantz
Journal:  Genetics       Date:  2014-02-13       Impact factor: 4.562

4.  ABC inference of multi-population divergence with admixture from unphased population genomic data.

Authors:  John D Robinson; Lynsey Bunnefeld; Jack Hearn; Graham N Stone; Michael J Hickerson
Journal:  Mol Ecol       Date:  2014-09-06       Impact factor: 6.185

5.  Efficient Strategies for Calculating Blockwise Likelihoods Under the Coalescent.

Authors:  Konrad Lohse; Martin Chmelik; Simon H Martin; Nicholas H Barton
Journal:  Genetics       Date:  2015-12-29       Impact factor: 4.562

6.  Exploring Evolutionary Relationships Across the Genome Using Topology Weighting.

Authors:  Simon H Martin; Steven M Van Belleghem
Journal:  Genetics       Date:  2017-03-24       Impact factor: 4.562

7.  Whole-genome data reveal the complex history of a diverse ecological community.

Authors:  Lynsey Bunnefeld; Jack Hearn; Graham N Stone; Konrad Lohse
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8.  Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae).

Authors:  James A Nicholls; R Toby Pennington; Erik J M Koenen; Colin E Hughes; Jack Hearn; Lynsey Bunnefeld; Kyle G Dexter; Graham N Stone; Catherine A Kidner
Journal:  Front Plant Sci       Date:  2015-09-17       Impact factor: 5.753

  8 in total

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