Literature DB >> 22889116

Competition among Ca2+, Mg2+, and Na+ for model ion channel selectivity filters: determinants of ion selectivity.

Todor Dudev1, Carmay Lim.   

Abstract

Because voltage-gated ion channels play critical biological roles, understanding how they can discriminate the native metal ion from rival cations in the milieu is of great interest. Although Ca(2+), Mg(2+), and Na(+) are present in comparable concentrations outside the cell, the factors governing the competition among these cations for the selectivity filter of voltage-gated Ca(2+) ion channel remain unclear. Using density functional theory combined with continuum dielectric methods, we evaluate the effect of (1) the number, chemical type, and charge of the ligands lining the pore, (2) the pore's rigidity, size, symmetry, and solvent accessibility, and (3) the Ca(2+) hydration number outside the selectivity filter on the competition among Ca(2+), Mg(2+), and Na(+) in model selectivity filters. The calculations show how the outcome of this competition depends on the interplay between electronic and solvation effects. Selectivity for monovalent Na(+) over divalent Ca(2+)/Mg(2+) is achieved when solvation effects outweigh electrostatic effects; thus filters comprising a few weak charge-donating groups such as Ser/Thr side chains, where electrostatic effects are relatively weak and are easily overcome by solvation effects, are Na(+)-selective. In contrast, selectivity for divalent Ca(2+)/Mg(2+) over monovalent Na(+) is achieved when metal-ligand electrostatic effects outweigh solvation effects. The key differences in selectivity between Mg(2+) and Ca(2+) lie in the pore size, oligomericity, and solvent accessibility. The results, which are consistent with available experimental data, reveal how the structure and composition of the ion channel selectivity pore had adapted to the specific physicochemical properties of the native metal ion to enhance the competitiveness of the native metal toward rival cations.

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Year:  2012        PMID: 22889116     DOI: 10.1021/jp304925a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

1.  The mechanism of Na⁺/K⁺ selectivity in mammalian voltage-gated sodium channels based on molecular dynamics simulation.

Authors:  Mengdie Xia; Huihui Liu; Yang Li; Nieng Yan; Haipeng Gong
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

2.  How the extra methylene group affects the ligation properties of Glu vs. Asp and Gln vs. Asn amino acids: a DFT/PCM study.

Authors:  Todor Dudev; Lyudmila Doudeva
Journal:  J Mol Model       Date:  2017-02-02       Impact factor: 1.810

Review 3.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

4.  The open gate of the K(V)1.2 channel: quantum calculations show the key role of hydration.

Authors:  Alisher M Kariev; Philipa Njau; Michael E Green
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

5.  Competition between abiogenic Al3+ and native Mg2+, Fe2+ and Zn2+ ions in protein binding sites: implications for aluminum toxicity.

Authors:  Todor Dudev; Diana Cheshmedzhieva; Lyudmila Doudeva
Journal:  J Mol Model       Date:  2018-02-14       Impact factor: 1.810

6.  Ion selectivity in the selectivity filters of acid-sensing ion channels.

Authors:  Todor Dudev; Carmay Lim
Journal:  Sci Rep       Date:  2015-01-19       Impact factor: 4.379

7.  Lysine and the Na+/K+ Selectivity in Mammalian Voltage-Gated Sodium Channels.

Authors:  Yang Li; Huihui Liu; Mengdie Xia; Haipeng Gong
Journal:  PLoS One       Date:  2016-09-01       Impact factor: 3.240

8.  Competition between Li+ and Na+ in sodium transporters and receptors: Which Na+-Binding sites are "therapeutic" Li+ targets?

Authors:  Todor Dudev; Karine Mazmanian; Carmay Lim
Journal:  Chem Sci       Date:  2018-04-02       Impact factor: 9.825

9.  Selectivity Mechanism of the Voltage-gated Proton Channel, HV1.

Authors:  Todor Dudev; Boris Musset; Deri Morgan; Vladimir V Cherny; Susan M E Smith; Karine Mazmanian; Thomas E DeCoursey; Carmay Lim
Journal:  Sci Rep       Date:  2015-05-08       Impact factor: 4.379

10.  Ion Permeation Mechanism in Epithelial Calcium Channel TRVP6.

Authors:  Serzhan Sakipov; Alexander I Sobolevsky; Maria G Kurnikova
Journal:  Sci Rep       Date:  2018-04-09       Impact factor: 4.379

  10 in total

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