Literature DB >> 22887678

Genome sequence of Pseudomonas putida strain SJTE-1, a bacterium capable of degrading estrogens and persistent organic pollutants.

Rubing Liang1, Huan Liu, Fei Tao, Yang Liu, Chen Ma, Xipeng Liu, Jianhua Liu.   

Abstract

Pseudomonas putida strain SJTE-1 can utilize 17β-estradiol and other environmental estrogens/toxicants, such as estrone, and naphthalene as sole carbon sources. We report the draft genome sequence of strain SJTE-1 (5,551,505 bp, with a GC content of 62.25%) and major findings from its annotation, which could provide insights into its biodegradation mechanisms.

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Year:  2012        PMID： 22887678      PMCID： PMC3415482          DOI： 10.1128/JB.01060-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  17beta-estradiol-degrading bacteria isolated from activated sludge.

Authors:  Chang-Ping Yu; Hyungkeun Roh; Kung-Hui Chu
Journal:  Environ Sci Technol       Date:  2007-01-15       Impact factor: 9.028

Review 3.  Endocrine disruption in wildlife: a critical review of the evidence.

Authors:  C R Tyler; S Jobling; J P Sumpter
Journal:  Crit Rev Toxicol       Date:  1998-07       Impact factor: 5.635

4.  Identification of a new steroid degrading bacterial strain H5 from the Baltic Sea and isolation of two estradiol inducible genes.

Authors:  Yingying Sang; Guangming Xiong; Edmund Maser
Journal:  J Steroid Biochem Mol Biol       Date:  2011-02-15       Impact factor: 4.292

5.  Degradation characteristics and metabolic pathway of 17alpha-ethynylestradiol by Sphingobacterium sp. JCR5.

Authors:  Ren Haiyan; Ji Shulan; Naeem ud din Ahmad; Wang Dao; Cui Chengwu
Journal:  Chemosphere       Date:  2006-06-12       Impact factor: 7.086

6.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

7.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
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  5 in total

1.  Identification and genome analysis of Deinococcus actinosclerus SJTR1, a novel 17β-estradiol degradation bacterium.

Authors:  Weiliang Xiong; Wanli Peng; Rubing Liang
Journal:  3 Biotech       Date:  2018-10-01       Impact factor: 2.406

2.  iTRAQ-based quantitative proteomic analysis of the global response to 17β-estradiol in estrogen-degradation strain Pseudomonas putida SJTE-1.

Authors:  Jing Xu; Lei Zhang; Jingli Hou; Xiuli Wang; Huan Liu; Daning Zheng; Rubing Liang
Journal:  Sci Rep       Date:  2017-02-03       Impact factor: 4.379

3.  Ultraviolet disinfection impacts the microbial community composition and function of treated wastewater effluent and the receiving urban river.

Authors:  Imrose Kauser; Mark Ciesielski; Rachel S Poretsky
Journal:  PeerJ       Date:  2019-08-06       Impact factor: 2.984

4.  Experimental and Genomic Evaluation of the Oestrogen Degrading Bacterium Rhodococcus equi ATCC13557.

Authors:  Sarah L Harthern-Flint; Jan Dolfing; Wojciech Mrozik; Paola Meynet; Lucy E Eland; Martin Sim; Russell J Davenport
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

5.  At a supra-physiological concentration, human sexual hormones act as quorum-sensing inhibitors.

Authors:  Amélie Beury-Cirou; Mélanie Tannières; Corinne Minard; Laurent Soulère; Tsiry Rasamiravaka; Robert H Dodd; Yves Queneau; Yves Dessaux; Catherine Guillou; Olivier M Vandeputte; Denis Faure
Journal:  PLoS One       Date:  2013-12-23       Impact factor: 3.240
  5 in total

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