Literature DB >> 22887664

Genome sequence of Hydrogenophaga sp. strain PBC, a 4-aminobenzenesulfonate-degrading bacterium.

Han Ming Gan1, Teong Han Chew, Yea-Ling Tay, Siew Fen Lye, Adibah Yahya.   

Abstract

Hydrogenophaga sp. strain PBC is an effective degrader of 4-aminobenzenesulfonate isolated from textile wastewater. Here we present the assembly and annotation of its genome, which may provide further insights into its metabolic potential. This is the first announcement of the draft genome sequence of a strain from the genus Hydrogenophaga.

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Year:  2012        PMID： 22887664      PMCID： PMC3415511          DOI： 10.1128/JB.00990-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

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Authors:  A Hammer; A Stolz; H Knackmuss
Journal:  Arch Microbiol       Date:  1996-08       Impact factor: 2.552

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  Biodegradation of sulfanilic acid by Pseudomonas paucimobilis.

Authors:  K Perei; G Rákhely; I Kiss; B Polyák; K L Kovács
Journal:  Appl Microbiol Biotechnol       Date:  2001-01       Impact factor: 4.813

4.  Cloning and functional analysis of the genes coding for 4-aminobenzenesulfonate 3,4-dioxygenase from Hydrogenophaga sp. PBC.

Authors:  Han Ming Gan; Shafinaz Shahir; Adibah Yahya
Journal:  Microbiology (Reading)       Date:  2012-05-18       Impact factor: 2.777

5.  Cloning of the genes for a 4-sulphocatechol-oxidizing protocatechuate 3,4-dioxygenase from Hydrogenophaga intermedia S1 and identification of the amino acid residues responsible for the ability to convert 4-sulphocatechol.

Authors:  M Contzen; S Bürger; A Stolz
Journal:  Mol Microbiol       Date:  2001-07       Impact factor: 3.501

6.  Characterization of the genes encoding the 3-carboxy-cis,cis-muconate-lactonizing enzymes from the 4-sulfocatechol degradative pathways of Hydrogenophaga intermedia S1 and Agrobacterium radiobacter S2.

Authors:  Sad Halak; Tamara Basta; Sibylle Bürger; Matthias Contzen; Andreas Stolz
Journal:  Microbiology       Date:  2006-11       Impact factor: 2.777

7.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

8.  Biodegradation of 4-aminobenzenesulfonate by a novel Pannonibacter sp. W1 isolated from activated sludge.

Authors:  Yan-Qing Wang; Jin-Song Zhang; Ji-Ti Zhou; Zhen-Peng Zhang
Journal:  J Hazard Mater       Date:  2009-04-08       Impact factor: 10.588

9.  4-sulfomuconolactone hydrolases from Hydrogenophaga intermedia S1 and Agrobacterium radiobacter S2.

Authors:  Sad Halak; Tamara Basta; Sibylle Bürger; Matthias Contzen; Victor Wray; Dietmar Helmut Pieper; Andreas Stolz
Journal:  J Bacteriol       Date:  2007-07-27       Impact factor: 3.490

10.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937
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  4 in total

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Authors:  Samuel Martin; Darren Heavens; Yuxuan Lan; Samuel Horsfield; Matthew D Clark; Richard M Leggett
Journal:  Genome Biol       Date:  2022-01-24       Impact factor: 17.906

2.  Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site.

Authors:  Shino Suzuki; J Gijs Kuenen; Kira Schipper; Suzanne van der Velde; Shun'ichi Ishii; Angela Wu; Dimitry Y Sorokin; Aaron Tenney; XianYing Meng; Penny L Morrill; Yoichi Kamagata; Gerard Muyzer; Kenneth H Nealson
Journal:  Nat Commun       Date:  2014-05-21       Impact factor: 14.919

3.  A glimpse into the genetic basis of symbiosis between Hydrogenophaga and their helper strains in the biodegradation of 4-aminobenzenesulfonate.

Authors:  Kangsan Kim; Han Ming Gan
Journal:  J Genomics       Date:  2017-07-10

4.  Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia, and Genomic Insights into 4-Aminobenzenesulfonate, p-Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga.

Authors:  Han M Gan; Yin P Lee; Christopher M Austin
Journal:  Front Microbiol       Date:  2017-10-04       Impact factor: 5.640
  4 in total

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