Literature DB >> 22887662

Genome sequence of Xanthomonas campestris JX, an industrially productive strain for Xanthan gum.

Fei Tao1, Xia Wang, Cuiqing Ma, Chunyu Yang, Hongzhi Tang, Zhonghui Gai, Ping Xu.   

Abstract

Xanthomonas campestris JX, a soil bacterium, is an industrially productive strain for xanthan gum. Here we present a 5.0-Mb assembly of its genome sequence. We have annotated 12 coding sequences (CDSs) responsible for xanthan gum biosynthesis, 346 CDSs encoding carbohydrate metabolism, and 69 CDSs related to virulence, defense, and plant disease.

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Year:  2012        PMID： 22887662      PMCID： PMC3415473          DOI： 10.1128/JB.00965-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Structure of extracellular polysaccharide from Xanthomonas campestris.

Authors:  P E Jansson; L Kenne; B Lindberg
Journal:  Carbohydr Res       Date:  1975-12       Impact factor: 2.104

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Chromosome map of Xanthomonas campestris pv. campestris 17 with locations of genes involved in xanthan gum synthesis and yellow pigmentation.

Authors:  Y H Tseng; K T Choy; C H Hung; N T Lin; J Y Liu; C H Lou; B Y Yang; F S Wen; S F Weng; J R Wu
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

4.  Promoter analysis of the Xanthomonas campestris pv. campestris gum operon directing biosynthesis of the xanthan polysaccharide.

Authors:  F Katzen; A Becker; A Zorreguieta; A Pühler; L Ielpi
Journal:  J Bacteriol       Date:  1996-07       Impact factor: 3.490

5.  Xanthan gum production under several operational conditions: molecular structure and rheological properties*

Authors: 
Journal:  Enzyme Microb Technol       Date:  2000-02-01       Impact factor: 3.493

6.  Genetic and physical analyses of a cluster of genes essential for xanthan gum biosynthesis in Xanthomonas campestris.

Authors:  N E Harding; J M Cleary; D K Cabañas; I G Rosen; K S Kang
Journal:  J Bacteriol       Date:  1987-06       Impact factor: 3.490

7.  Transcriptional analysis of the gum gene cluster from Xanthomonas oryzae pathovar oryzae.

Authors:  Ki-Hoon Yoon; Jae-Yong Cho
Journal:  Biotechnol Lett       Date:  2006-11-08       Impact factor: 2.461

Review 8.  Xanthan gum biosynthesis and application: a biochemical/genetic perspective.

Authors:  A Becker; F Katzen; A Pühler; L Ielpi
Journal:  Appl Microbiol Biotechnol       Date:  1998-08       Impact factor: 4.813

9.  Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in xanthomonas.

Authors:  Hong Lu; Prabhu Patil; Marie-Anne Van Sluys; Frank F White; Robert P Ryan; J Maxwell Dow; Pablo Rabinowicz; Steven L Salzberg; Jan E Leach; Ramesh Sonti; Volker Brendel; Adam J Bogdanove
Journal:  PLoS One       Date:  2008-11-27       Impact factor: 3.240

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  5 in total

1.  Draft Genome Sequence of the Xanthan Producer Xanthomonas campestris LMG 8031.

Authors:  Jochen Schmid; Christopher Huptas; Mareike Wenning
Journal:  Genome Announc       Date:  2016-10-27

2.  Dissection of exopolysaccharide biosynthesis in Kozakia baliensis.

Authors:  Julia U Brandt; Frank Jakob; Jürgen Behr; Andreas J Geissler; Rudi F Vogel
Journal:  Microb Cell Fact       Date:  2016-10-04       Impact factor: 5.328

3.  Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16.

Authors:  Stéphanie Bolot; Brice Roux; Sébastien Carrere; Bo-Le Jiang; Ji-Liang Tang; Matthieu Arlat; Laurent D Noël
Journal:  Genome Announc       Date:  2013-07-11

4.  Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

Authors:  Brice Roux; Stéphanie Bolot; Endrick Guy; Nicolas Denancé; Martine Lautier; Marie-Françoise Jardinaud; Marion Fischer-Le Saux; Perrine Portier; Marie-Agnès Jacques; Lionel Gagnevin; Olivier Pruvost; Emmanuelle Lauber; Matthieu Arlat; Sébastien Carrère; Ralf Koebnik; Laurent D Noël
Journal:  BMC Genomics       Date:  2015-11-18       Impact factor: 3.969

Review 5.  Biomedical Applications of Bacteria-Derived Polymers.

Authors:  Jonathan David Hinchliffe; Alakananda Parassini Madappura; Syed Mohammad Daniel Syed Mohamed; Ipsita Roy
Journal:  Polymers (Basel)       Date:  2021-03-29       Impact factor: 4.329
  5 in total

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