Literature DB >> 22887660

Genome sequence of the lactate-utilizing Pseudomonas aeruginosa strain XMG.

Chao Gao1, Chunhui Hu, Cuiqing Ma, Fei Su, Hao Yu, Tianyi Jiang, Peipei Dou, Yujiao Wang, Tong Qin, Min Lv, Ping Xu.   

Abstract

Pseudomonas aeruginosa XMG, isolated from soil, utilizes lactate. Here we present a 6.45-Mb assembly of its genome sequence. Besides the lactate utilization mechanism of the strain, the genome sequence may also provide other useful information related to P. aeruginosa, such as identifying genes involved in virulence, drug resistance, and aromatic catabolism.

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Year:  2012        PMID： 22887660      PMCID： PMC3415524          DOI： 10.1128/JB.00943-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

1.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.

Authors:  C K Stover; X Q Pham; A L Erwin; S D Mizoguchi; P Warrener; M J Hickey; F S Brinkman; W O Hufnagle; D J Kowalik; M Lagrou; R L Garber; L Goltry; E Tolentino; S Westbrock-Wadman; Y Yuan; L L Brody; S N Coulter; K R Folger; A Kas; K Larbig; R Lim; K Smith; D Spencer; G K Wong; Z Wu; I T Paulsen; J Reizer; M H Saier; R E Hancock; S Lory; M V Olson
Journal:  Nature       Date:  2000-08-31       Impact factor: 49.962

4.  Pseudomonas stutzeri as a novel biocatalyst for pyruvate production from DL-lactate.

Authors:  Jianrong Hao; Cuiqing Ma; Chao Gao; Jianhua Qiu; Min Wang; Yinan Zhang; Xing Cui; Ping Xu
Journal:  Biotechnol Lett       Date:  2006-11-08       Impact factor: 2.461

5.  Membrane-bound L- and D-lactate dehydrogenase activities of a newly isolated Pseudomonas stutzeri strain.

Authors:  Cuiqing Ma; Chao Gao; Jianhua Qiu; Jianrong Hao; Wenwen Liu; Ailong Wang; Yinan Zhang; Min Wang; Ping Xu
Journal:  Appl Microbiol Biotechnol       Date:  2007-09-06       Impact factor: 4.813

6.  Metabolism of D- and L-lactate by Pseudomonas putida.

Authors:  R W O'Brien
Journal:  Aust J Biol Sci       Date:  1977-12

Review 7.  Biotechnological routes to pyruvate production.

Authors:  Ping Xu; Jianhua Qiu; Chao Gao; Cuiqing Ma
Journal:  J Biosci Bioeng       Date:  2008-03       Impact factor: 2.894

8.  NAD-independent L-lactate dehydrogenase is required for L-lactate utilization in Pseudomonas stutzeri SDM.

Authors:  Chao Gao; Tianyi Jiang; Peipei Dou; Cuiqing Ma; Lixiang Li; Jian Kong; Ping Xu
Journal:  PLoS One       Date:  2012-05-04       Impact factor: 3.240

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  6 in total

1.  A Bacterial Multidomain NAD-Independent d-Lactate Dehydrogenase Utilizes Flavin Adenine Dinucleotide and Fe-S Clusters as Cofactors and Quinone as an Electron Acceptor for d-Lactate Oxidization.

Authors:  Tianyi Jiang; Xiaoting Guo; Jinxin Yan; Yingxin Zhang; Yujiao Wang; Manman Zhang; Binbin Sheng; Cuiqing Ma; Ping Xu; Chao Gao
Journal:  J Bacteriol       Date:  2017-10-17       Impact factor: 3.490

2.  Biochemical association of metabolic profile and microbiome in chronic pressure ulcer wounds.

Authors:  Mary Cloud B Ammons; Kathryn Morrissey; Brian P Tripet; James T Van Leuven; Anne Han; Gerald S Lazarus; Jonathan M Zenilman; Philip S Stewart; Garth A James; Valérie Copié
Journal:  PLoS One       Date:  2015-05-15       Impact factor: 3.240

3.  Genome Sequence of the Nonpathogenic Pseudomonas aeruginosa Strain ATCC 15442.

Authors:  Yujiao Wang; Chao Li; Chao Gao; Cuiqing Ma; Ping Xu
Journal:  Genome Announc       Date:  2014-05-01

4.  Reconstruction of lactate utilization system in Pseudomonas putida KT2440: a novel biocatalyst for l-2-hydroxy-carboxylate production.

Authors:  Yujiao Wang; Min Lv; Yingxin Zhang; Xieyue Xiao; Tianyi Jiang; Wen Zhang; Chunhui Hu; Chao Gao; Cuiqing Ma; Ping Xu
Journal:  Sci Rep       Date:  2014-11-06       Impact factor: 4.379

5.  Complete Genome Sequence of Pseudomonas aeruginosa PA1, Isolated from a Patient with a Respiratory Tract Infection.

Authors:  Shuguang Lu; Shuai Le; Gang Li; Mengyu Shen; Yinling Tan; Xia Zhao; Jing Wang; Wei Shen; Keke Guo; Yuhui Yang; Hongbin Zhu; Shu Li; Ming Li; Junmin Zhu; Xiancai Rao; Fuquan Hu
Journal:  Genome Announc       Date:  2015-12-10

6.  Interactions of organic acids with Campylobacter coli from swine.

Authors:  Ross C Beier; Roger B Harvey; Charles A Hernandez; Michael E Hume; Kathleen Andrews; Robert E Droleskey; Maureen K Davidson; Sonia Bodeis-Jones; Shenia Young; Sara E Duke; Robin C Anderson; Tawni L Crippen; Toni L Poole; David J Nisbet
Journal:  PLoS One       Date:  2018-08-10       Impact factor: 3.240
  6 in total

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