Literature DB >> 22884776

Evaluation of reference genes for quantitative PCR analysis of mouse lymphocytes.

Tina C Albershardt1, Brian M Iritani, Alanna Ruddell.   

Abstract

Normalization to a reference gene is the method of choice for quantitative PCR analysis. The stability of reference genes is critical for accurate gene expression analysis, as significant variations in reference gene expression can alter experimental results and conclusions. In this study, we evaluated the expression stability of five commonly used reference genes found in mouse lymphocytes. Using NormFinder and BestKeeper algorithms, we consistently show that ubiquitin C (Ubc) is the optimal reference gene for normalizing qPCR data obtained from mouse lymphocytes, whereas beta-actin (Actb) is not a suitable reference gene due to its extensive variability in expression. Our findings emphasize the importance of validating reference genes for qPCR analyses. We provide a shortlist of reference genes to use for normalization and recommend freely available software programs as a rapid approach to validate potential reference genes.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22884776      PMCID: PMC3432750          DOI: 10.1016/j.jim.2012.07.020

Source DB:  PubMed          Journal:  J Immunol Methods        ISSN: 0022-1759            Impact factor:   2.303


  18 in total

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5.  Housekeeping gene expression is affected by antidepressant treatment in a mouse fibroblast cell line.

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8.  Choosing a stable housekeeping gene and protein is essential in generating valid gene and protein expression results.

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  6 in total

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3.  Selection of a suitable reference gene for quantitative gene expression in mouse lymph nodes after vaccination.

Authors:  Yung-Yi C Mosley; Harm HogenEsch
Journal:  BMC Res Notes       Date:  2017-12-06

4.  PDGFA-associated protein 1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification.

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Journal:  J Exp Med       Date:  2020-10-05       Impact factor: 14.307

5.  Immune System Effects of Insulin-Like Peptide 5 in a Mouse Model.

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Journal:  Front Endocrinol (Lausanne)       Date:  2021-01-14       Impact factor: 5.555

6.  The Challenge of Stability in High-Throughput Gene Expression Analysis: Comprehensive Selection and Evaluation of Reference Genes for BALB/c Mice Spleen Samples in the Leishmania infantum Infection Model.

Authors:  Yasmina E Hernandez-Santana; Eduardo Ontoria; Ana C Gonzalez-García; M Antonieta Quispe-Ricalde; Vicente Larraga; Basilio Valladares; Emma Carmelo
Journal:  PLoS One       Date:  2016-09-26       Impact factor: 3.240

  6 in total

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