Literature DB >> 22884312

A statistical fat-tail test of predicting regulatory regions in the Drosophila genome.

Jian-Jun Shu1, Yajing Li.   

Abstract

A statistical study of cis-regulatory modules (CRMs) is presented based on the estimation of similar-word set distribution. It is observed that CRMs tend to have a fat-tail distribution. A new statistical fat-tail test with two kurtosis-based fatness coefficients is proposed to distinguish CRMs from non-CRMs. As compared with the existing fluffy-tail test, the first fatness coefficient is designed to reduce computational time, making the novel fat-tail test very suitable for long sequences and large database analysis in the post-genome time and the second one to improve separation accuracy between CRMs and non-CRMs. These two fatness coefficients may serve as valuable filtering indexes to predict CRMs experimentally.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22884312     DOI: 10.1016/j.compbiomed.2012.07.007

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  1 in total

1.  A statistical thin-tail test of predicting regulatory regions in the Drosophila genome.

Authors:  Jian-Jun Shu; Yajing Li
Journal:  Theor Biol Med Model       Date:  2013-02-14       Impact factor: 2.432

  1 in total

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