Literature DB >> 22883467

IsomiRs--the overlooked repertoire in the dynamic microRNAome.

Corine T Neilsen1, Gregory J Goodall, Cameron P Bracken.   

Abstract

The development of deep sequencing has enabled the identification of novel microRNAs (miRNAs), leading to a growing appreciation for the fact that individual miRNAs can be heterogeneous in length and/or sequence. These variants, termed isomiRs, can be expressed in a cell-specific manner, and numerous recent studies suggest that at least some isomiRs may affect target selection, miRNA stability, or loading into the RNA-induced silencing complex (RISC). Reports indicating differential functionality for isomiRs are currently confined to several specific variants, and although isomiRs are common, their broader biological significance is yet to be fully resolved. Here we review the growing body of evidence suggesting that isomiRs have functional differences, of which at least some appear biologically relevant, and caution researchers to take miRNA isoforms into consideration in their experiments.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22883467     DOI: 10.1016/j.tig.2012.07.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  227 in total

1.  Unravelling the complexity of microRNA-mediated gene regulation in black pepper (Piper nigrum L.) using high-throughput small RNA profiling.

Authors:  Srinivasan Asha; Sweda Sreekumar; E V Soniya
Journal:  Plant Cell Rep       Date:  2015-09-23       Impact factor: 4.570

Review 2.  A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.

Authors:  Bastian Fromm; Tyler Billipp; Liam E Peck; Morten Johansen; James E Tarver; Benjamin L King; James M Newcomb; Lorenzo F Sempere; Kjersti Flatmark; Eivind Hovig; Kevin J Peterson
Journal:  Annu Rev Genet       Date:  2015-10-14       Impact factor: 16.830

Review 3.  miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Authors:  T Desvignes; P Batzel; E Berezikov; K Eilbeck; J T Eppig; M S McAndrews; A Singer; J H Postlethwait
Journal:  Trends Genet       Date:  2015-10-08       Impact factor: 11.639

4.  isoTar: Consensus Target Prediction with Enrichment Analysis for MicroRNAs Harboring Editing Sites and Other Variations.

Authors:  Rosario Distefano; Giovanni Nigita; Dario Veneziano; Giulia Romano; Carlo M Croce; Mario Acunzo
Journal:  Methods Mol Biol       Date:  2019

5.  Expression and Function of hsa-miR-6165 in Human Cell Lines and During the NT2 Cell Neural Differentiation Process.

Authors:  Maryam Hassanlou; Bahram Mohammad Soltani; Seyed Javad Mowla
Journal:  J Mol Neurosci       Date:  2017-09-27       Impact factor: 3.444

6.  3' Uridylation Confers miRNAs with Non-canonical Target Repertoires.

Authors:  Acong Yang; Xavier Bofill-De Ros; Tie-Juan Shao; Minjie Jiang; Katherine Li; Patricia Villanueva; Lisheng Dai; Shuo Gu
Journal:  Mol Cell       Date:  2019-06-06       Impact factor: 17.970

7.  Integrating full spectrum of sequence features into predicting functional microRNA-mRNA interactions.

Authors:  Zixing Wang; Wenlong Xu; Yin Liu
Journal:  Bioinformatics       Date:  2015-06-30       Impact factor: 6.937

8.  Structural Basis for Target-Directed MicroRNA Degradation.

Authors:  Jessica Sheu-Gruttadauria; Paulina Pawlica; Shannon M Klum; Sonia Wang; Therese A Yario; Nicole T Schirle Oakdale; Joan A Steitz; Ian J MacRae
Journal:  Mol Cell       Date:  2019-07-25       Impact factor: 17.970

Review 9.  MicroRNAs in normal and psoriatic skin.

Authors:  Jing Xia; Weixiong Zhang
Journal:  Physiol Genomics       Date:  2013-12-10       Impact factor: 3.107

Review 10.  OxymiRs in cutaneous development, wound repair and regeneration.

Authors:  Chandan K Sen; Sashwati Roy
Journal:  Semin Cell Dev Biol       Date:  2012-10-10       Impact factor: 7.727

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