Literature DB >> 22879616

Complete genome sequence of a novel vitivirus isolated from grapevine.

Maher Al Rwahnih1, Mysore R Sudarshana, Jerry K Uyemoto, Adib Rowhani.   

Abstract

A novel virus-like sequence from grapevine was identified by Illumina sequencing. The complete genome is 7,551 nucleotides in length, with polyadenylation at the 3' end. Translation of the sequence revealed five open reading frames (ORFs). The genomic organization was most similar to those of vitiviruses. The polymerase (ORF1) and coat protein (ORF4) genes shared 31 to 49% nucleotide and 40 to 70% amino acid sequence identities, respectively, with other grapevine vitiviruses. The virus was tentatively named grapevine virus F (GVF).

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Year:  2012        PMID： 22879616      PMCID： PMC3416117          DOI： 10.1128/JVI.01444-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  2 in total

1.  Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus.

Authors:  M Al Rwahnih; S Daubert; D Golino; A Rowhani
Journal:  Virology       Date:  2009-05-10       Impact factor: 3.616

Review 2.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971
  2 in total
  9 in total

1.  Gene from a novel plant virus satellite from grapevine identifies a viral satellite lineage.

Authors:  Maher Al Rwahnih; Steve Daubert; Mysore R Sudarshana; Adib Rowhani
Journal:  Virus Genes       Date:  2013-05-24       Impact factor: 2.332

2.  Detection and molecular characterization of a Grapevine Roditis leaf discoloration-associated virus (GRLDaV) variant in an autochthonous grape from Apulia (Italy).

Authors:  Michela Chiumenti; Annalisa Giampetruzzi; Massimiliano Morelli; Vito Nicola Savino; Giovanni Paolo Martelli; Pierfederico La Notte; Francesco Palmisano; Pasquale Saldarelli
Journal:  Virus Genes       Date:  2016-02-29       Impact factor: 2.332

3.  Virome of Grapevine Germplasm from the Anapa Ampelographic Collection (Russia).

Authors:  Darya Shvets; Elena Porotikova; Kirill Sandomirsky; Svetlana Vinogradova
Journal:  Viruses       Date:  2022-06-15       Impact factor: 5.818

4.  Characterization of New Isolates of Apricot vein clearing-associated virus and of a New Prunus-Infecting Virus: Evidence for Recombination as a Driving Force in Betaflexiviridae Evolution.

Authors:  Armelle Marais; Chantal Faure; Eldar Mustafayev; Thierry Candresse
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240

Review 5.  Historical perspective, development and applications of next-generation sequencing in plant virology.

Authors:  Marina Barba; Henryk Czosnek; Ahmed Hadidi
Journal:  Viruses       Date:  2014-01-06       Impact factor: 5.048

6.  High-Throughput Sequencing and the Viromic Study of Grapevine Leaves: From the Detection of Grapevine-Infecting Viruses to the Description of a New Environmental Tymovirales Member.

Authors:  Jean-Michel Hily; Thierry Candresse; Shahinez Garcia; Emmanuelle Vigne; Mélanie Tannière; Véronique Komar; Guillaume Barnabé; Antoine Alliaume; Sophie Gilg; Gérard Hommay; Monique Beuve; Armelle Marais; Olivier Lemaire
Journal:  Front Microbiol       Date:  2018-08-29       Impact factor: 5.640

7.  Citrus Tristeza Virus Genotype Detection Using High-Throughput Sequencing.

Authors:  Rachelle Bester; Glynnis Cook; Hans J Maree
Journal:  Viruses       Date:  2021-01-23       Impact factor: 5.048

8.  Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids.

Authors:  Rachelle Bester; Glynnis Cook; Johannes H J Breytenbach; Chanel Steyn; Rochelle De Bruyn; Hans J Maree
Journal:  Virol J       Date:  2021-03-22       Impact factor: 4.099

Review 9.  Grapevine Pathogenic Microorganisms: Understanding Infection Strategies and Host Response Scenarios.

Authors:  Grace Armijo; Rudolf Schlechter; Mario Agurto; Daniela Muñoz; Constanza Nuñez; Patricio Arce-Johnson
Journal:  Front Plant Sci       Date:  2016-03-30       Impact factor: 5.753
  9 in total

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