Literature DB >> 22879612

Genome sequence of herpes simplex virus 1 strain McKrae.

Stuart J Macdonald1, Heba H Mostafa, Lynda A Morrison, David J Davido.   

Abstract

The herpes simplex virus 1 (HSV-1) strain McKrae is highly virulent compared to other wild-type strains of HSV-1. To help us better understand the genetic determinants that lead to differences in the pathogenicity of McKrae and other HSV-1 strains, we sequenced its genome. Comparing the sequence of McKrae's genome to that of strain 17 revealed that the genomes differ by at least 752 single nucleotide polymorphisms (SNPs) and 86 insertion/deletion events (indels). Although the majority of these polymorphisms reside in noncoding regions, 241 SNPs and 10 indels alter the protein-coding sequences of 58 open reading frames. Some of these variations are expected to contribute to the pathogenic phenotype of McKrae.

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Year:  2012        PMID： 22879612      PMCID： PMC3416131          DOI： 10.1128/JVI.01469-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  13 in total

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Journal:  J Gen Virol       Date:  2002-12       Impact factor: 3.891

2.  The latent herpes simplex virus type 1 genome copy number in individual neurons is virus strain specific and correlates with reactivation.

Authors:  N M Sawtell; D K Poon; C S Tansky; R L Thompson
Journal:  J Virol       Date:  1998-07       Impact factor: 5.103

3.  Sequence variability in clinical and laboratory isolates of herpes simplex virus 1 reveals new mutations.

Authors:  Moriah L Szpara; Lance Parsons; L W Enquist
Journal:  J Virol       Date:  2010-03-10       Impact factor: 5.103

4.  Strain specificity of spontaneous and adrenergically induced HSV-1 ocular reactivation in latently infected rabbits.

Authors:  J M Hill; M A Rayfield; Y Haruta
Journal:  Curr Eye Res       Date:  1987-01       Impact factor: 2.424

5.  Herpes simplex virus type 1 ICP0 plays a critical role in the de novo synthesis of infectious virus following transfection of viral DNA.

Authors:  W Z Cai; P A Schaffer
Journal:  J Virol       Date:  1989-11       Impact factor: 5.103

6.  An avirulent ICP34.5 deletion mutant of herpes simplex virus type 1 is capable of in vivo spontaneous reactivation.

Authors:  G C Perng; R L Thompson; N M Sawtell; W E Taylor; S M Slanina; H Ghiasi; R Kaiwar; A B Nesburn; S L Wechsler
Journal:  J Virol       Date:  1995-05       Impact factor: 5.103

7.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

8.  A structural and functional comparison of the latency-associated transcript promoters of herpes simplex virus type 1 strains KOS and McKrae.

Authors:  L I Strelow; K A Laycock; P Y Jun; K A Rader; R H Brady; J K Miller; J S Pepose; D A Leib
Journal:  J Gen Virol       Date:  1994-09       Impact factor: 3.891

9.  Amino acid differences in glycoproteins B (gB), C (gC), H (gH) and L (gL) are associated with enhanced herpes simplex virus type-1 (McKrae) entry via the paired immunoglobulin-like type-2 receptor α.

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Journal:  Virol J       Date:  2012-06-13       Impact factor: 4.099

10.  Fast statistical alignment.

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Journal:  PLoS Comput Biol       Date:  2009-05-29       Impact factor: 4.475
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  25 in total

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Journal:  JCI Insight       Date:  2020-03-12

2.  Shared ancestry of herpes simplex virus 1 strain Patton with recent clinical isolates from Asia and with strain KOS63.

Authors:  Aldo Pourchet; Richard Copin; Matthew C Mulvey; Bo Shopsin; Ian Mohr; Angus C Wilson
Journal:  Virology       Date:  2017-12       Impact factor: 3.616

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Authors:  Robert J Danaher; Derrick E Fouts; Agnes P Chan; Yongwook Choi; Jessica DePew; Jamison M McCorrison; Karen E Nelson; Chunmei Wang; Craig S Miller
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4.  Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain.

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5.  Prior inhibition of AKT phosphorylation by BX795 can define a safer strategy to prevent herpes simplex virus-1 infection of the eye.

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Journal:  Ocul Surf       Date:  2019-11-23       Impact factor: 5.033

6.  Defective natural killer cell activity in a mouse model of eczema herpeticum.

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7.  Genome-wide engineering of an infectious clone of herpes simplex virus type 1 using synthetic genomics assembly methods.

Authors:  Lauren M Oldfield; Peter Grzesik; Alexander A Voorhies; Nina Alperovich; Derek MacMath; Claudia D Najera; Diya Sabrina Chandra; Sanjana Prasad; Vladimir N Noskov; Michael G Montague; Robert M Friedman; Prashant J Desai; Sanjay Vashee
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8.  A model of genital herpes simplex virus Type 1 infection in Rhesus Macaques.

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Journal:  J Med Primatol       Date:  2017-08       Impact factor: 0.667

9.  Viral forensic genomics reveals the relatedness of classic herpes simplex virus strains KOS, KOS63, and KOS79.

Authors:  Christopher D Bowen; Daniel W Renner; Jacob T Shreve; Yolanda Tafuri; Kimberly M Payne; Richard D Dix; Paul R Kinchington; Derek Gatherer; Moriah L Szpara
Journal:  Virology       Date:  2016-03-21       Impact factor: 3.616

10.  HSV-1 strain McKrae is more neuroinvasive than HSV-1 KOS after corneal or vaginal inoculation in mice.

Authors:  Hong Wang; David J Davido; Lynda A Morrison
Journal:  Virus Res       Date:  2013-01-20       Impact factor: 3.303
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