Literature DB >> 22878052

So many doggone traits: mapping genetics of multiple phenotypes in the domestic dog.

Maud Rimbault1, Elaine A Ostrander.   

Abstract

The worldwide dog population is fragmented into >350 domestic breeds. Breeds share a common ancestor, the gray wolf. The intense artificial selection imposed by humans to develop breeds with particular behaviors and phenotypic traits has occurred primarily in the last 200-300 years. As a result, the number of genes controlling the major differences in body size, leg length, head shape, etc. that define each dog is small, and genetically tractable. This is in comparison to many human complex traits where small amounts of variance are controlled by literally hundreds of genes. We have been interested in disentangling the genetic mechanisms controlling breed-defining morphological traits in the domestic dog. The structure of the dog population, comprised large numbers of pure breeding populations, makes this task surprisingly doable. In this review, we summarize recent work on the genetics of body size, leg length and skull shape, while setting the stage for tackling other traits. It is our expectation that these results will contribute to a better understanding of mammalian developmental processes overall.

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Year:  2012        PMID: 22878052      PMCID: PMC3459646          DOI: 10.1093/hmg/dds323

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  40 in total

1.  Many sequence variants affecting diversity of adult human height.

Authors:  Daniel F Gudbjartsson; G Bragi Walters; Gudmar Thorleifsson; Hreinn Stefansson; Bjarni V Halldorsson; Pasha Zusmanovich; Patrick Sulem; Steinunn Thorlacius; Arnaldur Gylfason; Stacy Steinberg; Anna Helgadottir; Andres Ingason; Valgerdur Steinthorsdottir; Elinborg J Olafsdottir; Gudridur H Olafsdottir; Thorvaldur Jonsson; Knut Borch-Johnsen; Torben Hansen; Gitte Andersen; Torben Jorgensen; Oluf Pedersen; Katja K Aben; J Alfred Witjes; Dorine W Swinkels; Martin den Heijer; Barbara Franke; Andre L M Verbeek; Diane M Becker; Lisa R Yanek; Lewis C Becker; Laufey Tryggvadottir; Thorunn Rafnar; Jeffrey Gulcher; Lambertus A Kiemeney; Augustine Kong; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

2.  Franklin H. Epstein Lecture. Both ends of the leash--the human links to good dogs with bad genes.

Authors:  Elaine A Ostrander
Journal:  N Engl J Med       Date:  2012-08-16       Impact factor: 91.245

3.  Molecular evolution of the dog family.

Authors:  R K Wayne
Journal:  Trends Genet       Date:  1993-06       Impact factor: 11.639

4.  Breed relationships facilitate fine-mapping studies: a 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds.

Authors:  Heidi G Parker; Anna V Kukekova; Dayna T Akey; Orly Goldstein; Ewen F Kirkness; Kathleen C Baysac; Dana S Mosher; Gustavo D Aguirre; Gregory M Acland; Elaine A Ostrander
Journal:  Genome Res       Date:  2007-10-04       Impact factor: 9.043

5.  Genetic basis for systems of skeletal quantitative traits: principal component analysis of the canid skeleton.

Authors:  Kevin Chase; David R Carrier; Frederick R Adler; Tyler Jarvik; Elaine A Ostrander; Travis D Lorentzen; Karl G Lark
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-11       Impact factor: 11.205

6.  Genetic structure of the purebred domestic dog.

Authors:  Heidi G Parker; Lisa V Kim; Nathan B Sutter; Scott Carlson; Travis D Lorentzen; Tiffany B Malek; Gary S Johnson; Hawkins B DeFrance; Elaine A Ostrander; Leonid Kruglyak
Journal:  Science       Date:  2004-05-21       Impact factor: 47.728

7.  Identification of ten loci associated with height highlights new biological pathways in human growth.

Authors:  Guillaume Lettre; Anne U Jackson; Christian Gieger; Fredrick R Schumacher; Sonja I Berndt; Serena Sanna; Susana Eyheramendy; Benjamin F Voight; Johannah L Butler; Candace Guiducci; Thomas Illig; Rachel Hackett; Iris M Heid; Kevin B Jacobs; Valeriya Lyssenko; Manuela Uda; Michael Boehnke; Stephen J Chanock; Leif C Groop; Frank B Hu; Bo Isomaa; Peter Kraft; Leena Peltonen; Veikko Salomaa; David Schlessinger; David J Hunter; Richard B Hayes; Gonçalo R Abecasis; H-Erich Wichmann; Karen L Mohlke; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

8.  Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.

Authors:  Amaury Vaysse; Abhirami Ratnakumar; Thomas Derrien; Erik Axelsson; Gerli Rosengren Pielberg; Snaevar Sigurdsson; Tove Fall; Eija H Seppälä; Mark S T Hansen; Cindy T Lawley; Elinor K Karlsson; Danika Bannasch; Carles Vilà; Hannes Lohi; Francis Galibert; Merete Fredholm; Jens Häggström; Ake Hedhammar; Catherine André; Kerstin Lindblad-Toh; Christophe Hitte; Matthew T Webster
Journal:  PLoS Genet       Date:  2011-10-13       Impact factor: 5.917

9.  A 33,000-year-old incipient dog from the Altai Mountains of Siberia: evidence of the earliest domestication disrupted by the Last Glacial Maximum.

Authors:  Nikolai D Ovodov; Susan J Crockford; Yaroslav V Kuzmin; Thomas F G Higham; Gregory W L Hodgins; Johannes van der Plicht
Journal:  PLoS One       Date:  2011-07-28       Impact factor: 3.240

10.  Origins of domestic dog in southern East Asia is supported by analysis of Y-chromosome DNA.

Authors:  Z-L Ding; M Oskarsson; A Ardalan; H Angleby; L-G Dahlgren; C Tepeli; E Kirkness; P Savolainen; Y-P Zhang
Journal:  Heredity (Edinb)       Date:  2011-11-23       Impact factor: 3.821

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  16 in total

1.  Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs.

Authors:  Clare D Marsden; Diego Ortega-Del Vecchyo; Dennis P O'Brien; Jeremy F Taylor; Oscar Ramirez; Carles Vilà; Tomas Marques-Bonet; Robert D Schnabel; Robert K Wayne; Kirk E Lohmueller
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

2.  Extent of linkage disequilibrium in large-breed dogs: chromosomal and breed variation.

Authors:  Joshua A Stern; Stephen N White; Kathryn M Meurs
Journal:  Mamm Genome       Date:  2013-09-06       Impact factor: 2.957

3.  Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.

Authors:  Meenakshi Roy; Namshin Kim; Kyung Kim; Won-Hyong Chung; Rujira Achawanantakun; Yanni Sun; Robert Wayne
Journal:  Mamm Genome       Date:  2013-11-08       Impact factor: 2.957

4.  A comprehensive biomedical variant catalogue based on whole genome sequences of 582 dogs and eight wolves.

Authors:  V Jagannathan; C Drögemüller; T Leeb
Journal:  Anim Genet       Date:  2019-09-05       Impact factor: 3.169

5.  Increased risk of cancer in dogs and humans: a consequence of recent extension of lifespan beyond evolutionarily-determined limitations?

Authors:  Aaron L Sarver; Kelly M Makielski; Taylor A DePauw; Ashley J Schulte; Jaime F Modiano
Journal:  Aging Cancer       Date:  2022-02-23

6.  Genome-wide association studies of 74 plasma metabolites of German shepherd dogs reveal two metabolites associated with genes encoding their enzymes.

Authors:  Pamela Xing Yi Soh; Juliana Maria Marin Cely; Sally-Anne Mortlock; Christopher James Jara; Rachel Booth; Siria Natera; Ute Roessner; Ben Crossett; Stuart Cordwell; Mehar Singh Khatkar; Peter Williamson
Journal:  Metabolomics       Date:  2019-09-06       Impact factor: 4.290

Review 7.  Physiological underpinnings in life-history trade-offs in man's most popular selection experiment: the dog.

Authors:  Ana Gabriela Jimenez
Journal:  J Comp Physiol B       Date:  2016-05-24       Impact factor: 2.200

8.  Identification of genomic variants putatively targeted by selection during dog domestication.

Authors:  Alex Cagan; Torsten Blass
Journal:  BMC Evol Biol       Date:  2016-01-12       Impact factor: 3.260

9.  Functional analysis and transcriptional output of the Göttingen minipig genome.

Authors:  Tobias Heckel; Roland Schmucki; Marco Berrera; Stephan Ringshandl; Laura Badi; Guido Steiner; Morgane Ravon; Erich Küng; Bernd Kuhn; Nicole A Kratochwil; Georg Schmitt; Anna Kiialainen; Corinne Nowaczyk; Hamina Daff; Azinwi Phina Khan; Isaac Lekolool; Roger Pelle; Edward Okoth; Richard Bishop; Claudia Daubenberger; Martin Ebeling; Ulrich Certa
Journal:  BMC Genomics       Date:  2015-11-14       Impact factor: 3.969

10.  Commonalities in Development of Pure Breeds and Population Isolates Revealed in the Genome of the Sardinian Fonni's Dog.

Authors:  Dayna L Dreger; Brian W Davis; Raffaella Cocco; Sara Sechi; Alessandro Di Cerbo; Heidi G Parker; Michele Polli; Stefano P Marelli; Paola Crepaldi; Elaine A Ostrander
Journal:  Genetics       Date:  2016-08-12       Impact factor: 4.562

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