Literature DB >> 22869120

Crystallization and preliminary X-ray diffraction analysis of a novel type of phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6.

Yoko Chiba1, Shoichiro Horita, Jun Ohtsuka, Hiroyuki Arai, Koji Nagata, Yasuo Igarashi, Masaru Tanokura, Masaharu Ishii.   

Abstract

Two novel-type phosphoserine phosphatases (PSPs) with unique substrate specificity from the thermophilic and hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6 have previously been identified. Here, one of the PSPs (iPSP1) was heterologously expressed in Escherichia coli, purified and crystallized. Diffraction-quality crystals were obtained by the sitting-drop vapour-diffusion method using PEG 4000 as the precipitant. Two diffraction data sets with resolution ranges of 45.0-2.50 and 45.0-1.50 Å were collected from a single crystal and were merged to give a highly complete data set. The space group of the crystal was identified as primitive orthorhombic P2(1)2(1)2(1), with unit-cell parameters a = 49.8, b = 73.6, c = 124.3 Å. The calculated Matthews coefficient (V(M) = 2.32 Å(3) Da(-1)) indicated that the crystal contained one iPSP1 complex per asymmetric unit.

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Year:  2012        PMID: 22869120      PMCID: PMC3412771          DOI: 10.1107/S1744309112025213

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

1.  Characterization of a new phosphatase from Plasmodium.

Authors:  Tanya Hills; Anubhav Srivastava; Kodjo Ayi; Amy K Wernimont; Kevin Kain; Andrew P Waters; Raymond Hui; Juan C Pizarro
Journal:  Mol Biochem Parasitol       Date:  2011-06-13       Impact factor: 1.759

2.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

3.  Structure and mechanism of action of a cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus with broad specificity phosphatase activity.

Authors:  Daniel J Rigden; Luciane V Mello; Peter Setlow; Mark J Jedrzejas
Journal:  J Mol Biol       Date:  2002-02-01       Impact factor: 5.469

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Characterization and functional investigation of an Arabidopsis cDNA encoding a homologue to the d-PGMase superfamily.

Authors:  Fabienne Bourgis; Fredrik C Botha; Srikrishnan Mani; Fletcher N Hiten; Daniel J Rigden; Nathalie Verbruggen
Journal:  J Exp Bot       Date:  2005-02-28       Impact factor: 6.992

6.  Discovery and analysis of cofactor-dependent phosphoglycerate mutase homologs as novel phosphoserine phosphatases in Hydrogenobacter thermophilus.

Authors:  Yoko Chiba; Kenro Oshima; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  J Biol Chem       Date:  2012-02-15       Impact factor: 5.157

7.  A cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus is actually a broad specificity phosphatase.

Authors:  D J Rigden; I Bagyan; E Lamani; P Setlow; M J Jedrzejas
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

8.  Structures of phosphate and trivanadate complexes of Bacillus stearothermophilus phosphatase PhoE: structural and functional analysis in the cofactor-dependent phosphoglycerate mutase superfamily.

Authors:  Daniel J Rigden; James E Littlejohn; Keith Henderson; Mark J Jedrzejas
Journal:  J Mol Biol       Date:  2003-01-17       Impact factor: 5.469

  8 in total
  1 in total

1.  Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis.

Authors:  Yoko Chiba; Shoichiro Horita; Jun Ohtsuka; Hiroyuki Arai; Koji Nagata; Yasuo Igarashi; Masaru Tanokura; Masaharu Ishii
Journal:  J Biol Chem       Date:  2013-03-11       Impact factor: 5.157

  1 in total

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