Literature DB >> 22864549

Complete sequence of an Apple stem grooving virus (ASGV) isolate from China.

Lei Zhao1, Xingan Hao, Ping Liu, Yunfeng Wu.   

Abstract

The complete genome sequence of a Chinese isolate of Apple stem grooving virus (ASGV) was determined to be 6,495 nucleotides long, single-stranded, plus-sense RNA. The viral RNA has two overlapping open reading frames (ORFs): ORF1 and ORF2. Compared with the genome sequences of ASGV isolates available in GenBank, the nucleotide identities ranged from 80.1 to 86.3 %. The amino acid identities of proteins encoded by ORF1 and ORF2 ranged from 79.5 to 86.1 % and 82.0 to 85.9 %, respectively.

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Year:  2012        PMID： 22864549     DOI： 10.1007/s11262-012-0799-5

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  8 in total

1.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

2.  Complete sequence of an infectious full-length cDNA clone of citrus tatter leaf capillovirus: comparative sequence analysis of capillovirus genomes.

Authors:  K Ohira; S Namba; M Rozanov; T Kusumi; T Tsuchizaki
Journal:  J Gen Virol       Date:  1995-09       Impact factor: 3.891

3.  Identification of a pathogenicity determinant of Plum pox virus in the sequence encoding the C-terminal region of protein P3+6K(1).

Authors:  P Sáenz; M T Cervera; S Dallot; L Quiot; J B Quiot; J L Riechmann; J A García
Journal:  J Gen Virol       Date:  2000-03       Impact factor: 3.891

4.  Multiple determinants in the coding region of Pea seed-borne mosaic virus P3 are involved in virulence against sbm-2 resistance.

Authors:  Charlotte Kristiane Hjulsager; Birgit Schlichter Olsen; Ditte Marie Kjaer Jensen; Mirela Irina Cordea; Britta N Krath; I Elisabeth Johansen; Ole Søgaard Lund
Journal:  Virology       Date:  2006-09-05       Impact factor: 3.616

5.  Nucleotide sequences of a Korean isolate of apple stem grooving virus associated with black necrotic leaf spot disease on pear (Pyrus pyrifolia).

Authors:  Hyekyung Shim; Yeonju Min; Sungyoul Hong; Moonsik Kwon; Daehyun Kim; Hyunran Kim; Yongmoon Choi; Sukchan Lee; Jaemyung Yang
Journal:  Mol Cells       Date:  2004-10-31       Impact factor: 5.034

6.  Molecular variability of the genomes of capilloviruses from apple, Japanese pear, European pear, and citrus trees.

Authors:  H Magome; N Yoshikawa; T Takahashi; T Ito; T Miyakawa
Journal:  Phytopathology       Date:  1997-04       Impact factor: 4.025

7.  Characterization of the 5'- and 3'-terminal subgenomic RNAs produced by a capillovirus: Evidence for a CP subgenomic RNA.

Authors:  Satyanarayana Tatineni; Mohammad R Afunian; Siddarame Gowda; Mark E Hilf; Moshe Bar-Joseph; William O Dawson
Journal:  Virology       Date:  2009-01-19       Impact factor: 3.616

8.  The nucleotide sequence of apple stem grooving capillovirus genome.

Authors:  N Yoshikawa; E Sasaki; M Kato; T Takahashi
Journal:  Virology       Date:  1992-11       Impact factor: 3.616
  8 in total
  2 in total

1.  Cryopreservation of virus: a novel biotechnology for long-term preservation of virus in shoot tips.

Authors:  Min-Rui Wang; Wen Yang; Lei Zhao; Jing-Wei Li; Ke Liu; Jing-Wei Yu; Yun-Feng Wu; Qiao-Chun Wang
Journal:  Plant Methods       Date:  2018-06-12       Impact factor: 4.993

2.  High-Throughput RNA Sequencing of Mosaic Infected and Non-Infected Apple (Malus × domestica Borkh.) Cultivars: From Detection to the Reconstruction of Whole Genome of Viruses and Viroid.

Authors:  Sajad U Nabi; Virendra K Baranwal; Govind P Rao; Sheikh Mansoor; Carmen Vladulescu; Wasim H Raja; Basit L Jan; Saleh Alansi
Journal:  Plants (Basel)       Date:  2022-03-01
  2 in total

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