Literature DB >> 22863192

Rare de novo germline copy-number variation in testicular cancer.

Zsofia K Stadler1, Diane Esposito, Sohela Shah, Joseph Vijai, Boris Yamrom, Dan Levy, Yoon-Ha Lee, Jude Kendall, Anthony Leotta, Michael Ronemus, Nichole Hansen, Kara Sarrel, Rohini Rau-Murthy, Kasmintan Schrader, Noah Kauff, Robert J Klein, Steven M Lipkin, Rajmohan Murali, Mark Robson, Joel Sheinfeld, Darren Feldman, George Bosl, Larry Norton, Michael Wigler, Kenneth Offit.   

Abstract

Although heritable factors are an important determinant of risk of early-onset cancer, the majority of these malignancies appear to occur sporadically without identifiable risk factors. Germline de novo copy-number variations (CNVs) have been observed in sporadic neurocognitive and cardiovascular disorders. We explored this mechanism in 382 genomes of 116 early-onset cancer case-parent trios and unaffected siblings. Unique de novo germline CNVs were not observed in 107 breast or colon cancer trios or controls but were indeed found in 7% of 43 testicular germ cell tumor trios; this percentage exceeds background CNV rates and suggests a rare de novo genetic paradigm for susceptibility to some human malignancies.
Copyright © 2012 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22863192      PMCID: PMC3415553          DOI: 10.1016/j.ajhg.2012.06.019

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  16 in total

1.  Reducing system noise in copy number data using principal components of self-self hybridizations.

Authors:  Yoon-ha Lee; Michael Ronemus; Jude Kendall; B Lakshmi; Anthony Leotta; Dan Levy; Diane Esposito; Vladimir Grubor; Kenny Ye; Michael Wigler; Boris Yamrom
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

2.  The Y deletion gr/gr and susceptibility to testicular germ cell tumor.

Authors:  Katherine L Nathanson; Peter A Kanetsky; Rachel Hawes; David J Vaughn; Richard Letrero; Kathy Tucker; Michael Friedlander; Kelly-Anne Phillips; David Hogg; Michael A S Jewett; Radka Lohynska; Gedske Daugaard; Stéphane Richard; Agnés Chompret; Catherine Bonaïti-Pellié; Axel Heidenreich; Edith Olah; Lajos Geczi; Istvan Bodrogi; Wilma J Ormiston; Peter A Daly; J Wolter Oosterhuis; Ad J M Gillis; Leendert H J Looijenga; Parry Guilford; Sophie D Fosså; Ketil Heimdal; Sergei A Tjulandin; Ludmila Liubchenko; Hans Stoll; Walter Weber; Matthew Rudd; Robert Huddart; Gillian P Crockford; David Forman; D Timothy Oliver; Lawrence Einhorn; Barbara L Weber; Joan Kramer; Mary McMaster; Mark H Greene; Malcolm Pike; Victoria Cortessis; Chu Chen; Stephen M Schwartz; D Timothy Bishop; Douglas F Easton; Michael R Stratton; Elizabeth A Rapley
Journal:  Am J Hum Genet       Date:  2005-10-24       Impact factor: 11.025

3.  Identification of a novel gene on chromosome 7q11.2 interrupted by a translocation breakpoint in a pair of autistic twins.

Authors:  Razia Sultana; Chang-En Yu; Jun Yu; Jeffery Munson; Donghui Chen; Wenhui Hua; Annette Estes; Fanny Cortes; Flora de la Barra; Dongmei Yu; Syed T Haider; Barbara J Trask; Eric D Green; Wendy H Raskind; Christine M Disteche; Ellen Wijsman; Geraldine Dawson; Daniel R Storm; Gerard D Schellenberg; Enrique C Villacres
Journal:  Genomics       Date:  2002-08       Impact factor: 5.736

Review 4.  Medical treatment of advanced testicular cancer.

Authors:  Darren R Feldman; George J Bosl; Joel Sheinfeld; Robert J Motzer
Journal:  JAMA       Date:  2008-02-13       Impact factor: 56.272

5.  In vivo differentiation and genomic evolution in adult male germ cell tumors.

Authors:  J E Korkola; S Heck; A B Olshen; V E Reuter; G J Bosl; J Houldsworth; R S K Chaganti
Journal:  Genes Chromosomes Cancer       Date:  2008-01       Impact factor: 5.006

6.  Strong association of de novo copy number mutations with autism.

Authors:  Jonathan Sebat; B Lakshmi; Dheeraj Malhotra; Jennifer Troge; Christa Lese-Martin; Tom Walsh; Boris Yamrom; Seungtai Yoon; Alex Krasnitz; Jude Kendall; Anthony Leotta; Deepa Pai; Ray Zhang; Yoon-Ha Lee; James Hicks; Sarah J Spence; Annette T Lee; Kaija Puura; Terho Lehtimäki; David Ledbetter; Peter K Gregersen; Joel Bregman; James S Sutcliffe; Vaidehi Jobanputra; Wendy Chung; Dorothy Warburton; Mary-Claire King; David Skuse; Daniel H Geschwind; T Conrad Gilliam; Kenny Ye; Michael Wigler
Journal:  Science       Date:  2007-03-15       Impact factor: 47.728

7.  Strong association of de novo copy number mutations with sporadic schizophrenia.

Authors:  Bin Xu; J Louw Roos; Shawn Levy; E J van Rensburg; Joseph A Gogos; Maria Karayiorgou
Journal:  Nat Genet       Date:  2008-05-30       Impact factor: 38.330

Review 8.  Genetic aspects of testicular germ cell tumors.

Authors:  Csilla Krausz; Leendert H J Looijenga
Journal:  Cell Cycle       Date:  2008-11-12       Impact factor: 4.534

9.  Mutations in autism susceptibility candidate 2 (AUTS2) in patients with mental retardation.

Authors:  Vera M Kalscheuer; David FitzPatrick; Niels Tommerup; Merete Bugge; Erik Niebuhr; Luitgard M Neumann; Andreas Tzschach; Sarah A Shoichet; Corinna Menzel; Fikret Erdogan; Ger Arkesteijn; Hans-Hilger Ropers; Reinhard Ullmann
Journal:  Hum Genet       Date:  2007-01-09       Impact factor: 4.132

10.  Large recurrent microdeletions associated with schizophrenia.

Authors:  Hreinn Stefansson; Dan Rujescu; Sven Cichon; Olli P H Pietiläinen; Andres Ingason; Stacy Steinberg; Ragnheidur Fossdal; Engilbert Sigurdsson; Thordur Sigmundsson; Jacobine E Buizer-Voskamp; Thomas Hansen; Klaus D Jakobsen; Pierandrea Muglia; Clyde Francks; Paul M Matthews; Arnaldur Gylfason; Bjarni V Halldorsson; Daniel Gudbjartsson; Thorgeir E Thorgeirsson; Asgeir Sigurdsson; Adalbjorg Jonasdottir; Aslaug Jonasdottir; Asgeir Bjornsson; Sigurborg Mattiasdottir; Thorarinn Blondal; Magnus Haraldsson; Brynja B Magnusdottir; Ina Giegling; Hans-Jürgen Möller; Annette Hartmann; Kevin V Shianna; Dongliang Ge; Anna C Need; Caroline Crombie; Gillian Fraser; Nicholas Walker; Jouko Lonnqvist; Jaana Suvisaari; Annamarie Tuulio-Henriksson; Tiina Paunio; Timi Toulopoulou; Elvira Bramon; Marta Di Forti; Robin Murray; Mirella Ruggeri; Evangelos Vassos; Sarah Tosato; Muriel Walshe; Tao Li; Catalina Vasilescu; Thomas W Mühleisen; August G Wang; Henrik Ullum; Srdjan Djurovic; Ingrid Melle; Jes Olesen; Lambertus A Kiemeney; Barbara Franke; Chiara Sabatti; Nelson B Freimer; Jeffrey R Gulcher; Unnur Thorsteinsdottir; Augustine Kong; Ole A Andreassen; Roel A Ophoff; Alexander Georgi; Marcella Rietschel; Thomas Werge; Hannes Petursson; David B Goldstein; Markus M Nöthen; Leena Peltonen; David A Collier; David St Clair; Kari Stefansson
Journal:  Nature       Date:  2008-09-11       Impact factor: 49.962

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  10 in total

Review 1.  The role of AUTS2 in neurodevelopment and human evolution.

Authors:  Nir Oksenberg; Nadav Ahituv
Journal:  Trends Genet       Date:  2013-09-02       Impact factor: 11.639

2.  Germ-line DICER1 mutations do not make a major contribution to the etiology of familial testicular germ cell tumours.

Authors:  Nelly Sabbaghian; Amin Bahubeshi; Andrew Y Shuen; Peter A Kanetsky; Marc D Tischkowitz; Katherine L Nathanson; William D Foulkes
Journal:  BMC Res Notes       Date:  2013-04-01

3.  Genomic screening of testicular germ cell tumors from monozygotic twins.

Authors:  Sara Martoreli Silveira; Isabela Werneck da Cunha; Fabio Albuquerque Marchi; Ariane Fidelis Busso; Ademar Lopes; Silvia Regina Rogatto
Journal:  Orphanet J Rare Dis       Date:  2014-11-26       Impact factor: 4.123

4.  SMASH, a fragmentation and sequencing method for genomic copy number analysis.

Authors:  Zihua Wang; Peter Andrews; Jude Kendall; Beicong Ma; Inessa Hakker; Linda Rodgers; Michael Ronemus; Michael Wigler; Dan Levy
Journal:  Genome Res       Date:  2016-04-14       Impact factor: 9.043

5.  Spermatogonial Stem Cells: Implications for Genetic Disorders and Prevention.

Authors:  Makiko Yamada; Letizia De Chiara; Marco Seandel
Journal:  Stem Cells Dev       Date:  2016-09-05       Impact factor: 3.272

6.  Potential role of BCL2 in the recurrence of uterine smooth muscle tumors of uncertain malignant potential.

Authors:  Donatella Conconi; Valentina Chiappa; Patrizia Perego; Serena Redaelli; Giorgio Bovo; Marialuisa Lavitrano; Rodolfo Milani; Leda Dalprà; Andrea Alberto Lissoni
Journal:  Oncol Rep       Date:  2016-11-24       Impact factor: 3.906

7.  CNV Hotspots in Testicular Seminoma Tissue and Seminal Plasma.

Authors:  Dora Raos; Irena Abramović; Miroslav Tomić; Alen Vrtarić; Tomislav Kuliš; Marijana Ćorić; Monika Ulamec; Ana Katušić Bojanac; Davor Ježek; Nino Sinčić
Journal:  Cancers (Basel)       Date:  2021-12-31       Impact factor: 6.639

8.  Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.

Authors:  Daniel Edsgärd; Marlene D Dalgaard; Nils Weinhold; Agata Wesolowska-Andersen; Ewa Rajpert-De Meyts; Anne Marie Ottesen; Anders Juul; Niels E Skakkebæk; Thomas Skøt Jensen; Ramneek Gupta; Henrik Leffers; Søren Brunak
Journal:  Front Endocrinol (Lausanne)       Date:  2013-01-29       Impact factor: 5.555

Review 9.  Copy number polymorphism in plant genomes.

Authors:  Agnieszka Żmieńko; Anna Samelak; Piotr Kozłowski; Marek Figlerowicz
Journal:  Theor Appl Genet       Date:  2013-08-29       Impact factor: 5.699

10.  Genome-wide analysis of the role of copy-number variation in pancreatic cancer risk.

Authors:  Jason A Willis; Semanti Mukherjee; Irene Orlow; Agnes Viale; Kenneth Offit; Robert C Kurtz; Sara H Olson; Robert J Klein
Journal:  Front Genet       Date:  2014-02-13       Impact factor: 4.599

  10 in total

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