Literature DB >> 22863007

Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling.

Moumita Chaki1, Rannar Airik, Amiya K Ghosh, Rachel H Giles, Rui Chen, Gisela G Slaats, Hui Wang, Toby W Hurd, Weibin Zhou, Andrew Cluckey, Heon Yung Gee, Gokul Ramaswami, Chen-Jei Hong, Bruce A Hamilton, Igor Cervenka, Ranjani Sri Ganji, Vitezslav Bryja, Heleen H Arts, Jeroen van Reeuwijk, Machteld M Oud, Stef J F Letteboer, Ronald Roepman, Hervé Husson, Oxana Ibraghimov-Beskrovnaya, Takayuki Yasunaga, Gerd Walz, Lorraine Eley, John A Sayer, Bernhard Schermer, Max C Liebau, Thomas Benzing, Stephanie Le Corre, Iain Drummond, Sabine Janssen, Susan J Allen, Sivakumar Natarajan, John F O'Toole, Massimo Attanasio, Sophie Saunier, Corinne Antignac, Robert K Koenekoop, Huanan Ren, Irma Lopez, Ahmet Nayir, Corinne Stoetzel, Helene Dollfus, Rustin Massoudi, Joseph G Gleeson, Sharon P Andreoli, Dan G Doherty, Anna Lindstrad, Christelle Golzio, Nicholas Katsanis, Lars Pape, Emad B Abboud, Ali A Al-Rajhi, Richard A Lewis, Heymut Omran, Eva Y-H P Lee, Shaohui Wang, Joann M Sekiguchi, Rudel Saunders, Colin A Johnson, Elizabeth Garner, Katja Vanselow, Jens S Andersen, Joseph Shlomai, Gudrun Nurnberg, Peter Nurnberg, Shawn Levy, Agata Smogorzewska, Edgar A Otto, Friedhelm Hildebrandt.   

Abstract

Nephronophthisis-related ciliopathies (NPHP-RC) are degenerative recessive diseases that affect kidney, retina, and brain. Genetic defects in NPHP gene products that localize to cilia and centrosomes defined them as "ciliopathies." However, disease mechanisms remain poorly understood. Here, we identify by whole-exome resequencing, mutations of MRE11, ZNF423, and CEP164 as causing NPHP-RC. All three genes function within the DNA damage response (DDR) pathway. We demonstrate that, upon induced DNA damage, the NPHP-RC proteins ZNF423, CEP164, and NPHP10 colocalize to nuclear foci positive for TIP60, known to activate ATM at sites of DNA damage. We show that knockdown of CEP164 or ZNF423 causes sensitivity to DNA damaging agents and that cep164 knockdown in zebrafish results in dysregulated DDR and an NPHP-RC phenotype. Our findings link degenerative diseases of the kidney and retina, disorders of increasing prevalence, to mechanisms of DDR.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22863007      PMCID: PMC3433835          DOI: 10.1016/j.cell.2012.06.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  71 in total

1.  Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: application to mite sensitization.

Authors:  K Strauch; R Fimmers; T Kurz; K A Deichmann; T F Wienker; M P Baur
Journal:  Am J Hum Genet       Date:  2000-05-04       Impact factor: 11.025

2.  Allegro, a new computer program for multipoint linkage analysis.

Authors:  D F Gudbjartsson; K Jonasson; M L Frigge; A Kong
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

3.  In-frame deletion in a novel centrosomal/ciliary protein CEP290/NPHP6 perturbs its interaction with RPGR and results in early-onset retinal degeneration in the rd16 mouse.

Authors:  Bo Chang; Hemant Khanna; Norman Hawes; David Jimeno; Shirley He; Concepcion Lillo; Sunil K Parapuram; Hong Cheng; Alison Scott; Ron E Hurd; John A Sayer; Edgar A Otto; Massimo Attanasio; John F O'Toole; Genglin Jin; Chengchao Shou; Friedhelm Hildebrandt; David S Williams; John R Heckenlively; Anand Swaroop
Journal:  Hum Mol Genet       Date:  2006-04-21       Impact factor: 6.150

4.  Mutations in CEP290, which encodes a centrosomal protein, cause pleiotropic forms of Joubert syndrome.

Authors:  Enza Maria Valente; Jennifer L Silhavy; Francesco Brancati; Giuseppe Barrano; Suguna Rani Krishnaswami; Marco Castori; Madeline A Lancaster; Eugen Boltshauser; Loredana Boccone; Lihadh Al-Gazali; Elisa Fazzi; Sabrina Signorini; Carrie M Louie; Emanuele Bellacchio; Enrico Bertini; Bruno Dallapiccola; Joseph G Gleeson
Journal:  Nat Genet       Date:  2006-05-07       Impact factor: 38.330

5.  The DNA double-strand break repair gene hMRE11 is mutated in individuals with an ataxia-telangiectasia-like disorder.

Authors:  G S Stewart; R S Maser; T Stankovic; D A Bressan; M I Kaplan; N G Jaspers; A Raams; P J Byrd; J H Petrini; A M Taylor
Journal:  Cell       Date:  1999-12-10       Impact factor: 41.582

6.  The gene mutated in juvenile nephronophthisis type 4 encodes a novel protein that interacts with nephrocystin.

Authors:  Géraldine Mollet; Rémi Salomon; Olivier Gribouval; Flora Silbermann; Delphine Bacq; Gilbert Landthaler; David Milford; Ahmet Nayir; Gianfranco Rizzoni; Corinne Antignac; Sophie Saunier
Journal:  Nat Genet       Date:  2002-09-09       Impact factor: 38.330

7.  Drosophila asterless and vertebrate Cep152 Are orthologs essential for centriole duplication.

Authors:  Stephanie Blachon; Jayachandran Gopalakrishnan; Yoshihiro Omori; Andrey Polyanovsky; Allen Church; Daniela Nicastro; Jarema Malicki; Tomer Avidor-Reiss
Journal:  Genetics       Date:  2008-10-14       Impact factor: 4.562

8.  UV-dependent interaction between Cep164 and XPA mediates localization of Cep164 at sites of DNA damage and UV sensitivity.

Authors:  Yen-Ru Pan; Eva Y-H P Lee
Journal:  Cell Cycle       Date:  2009-02-14       Impact factor: 4.534

Review 9.  Nephronophthisis: disease mechanisms of a ciliopathy.

Authors:  Friedhelm Hildebrandt; Massimo Attanasio; Edgar Otto
Journal:  J Am Soc Nephrol       Date:  2008-12-31       Impact factor: 10.121

10.  A systematic approach to mapping recessive disease genes in individuals from outbred populations.

Authors:  Friedhelm Hildebrandt; Saskia F Heeringa; Franz Rüschendorf; Massimo Attanasio; Gudrun Nürnberg; Christian Becker; Dominik Seelow; Norbert Huebner; Gil Chernin; Christopher N Vlangos; Weibin Zhou; John F O'Toole; Bethan E Hoskins; Matthias T F Wolf; Bernward G Hinkes; Hassan Chaib; Shazia Ashraf; Dominik S Schoeb; Bugsu Ovunc; Susan J Allen; Virginia Vega-Warner; Eric Wise; Heather M Harville; Robert H Lyons; Joseph Washburn; James Macdonald; Peter Nürnberg; Edgar A Otto
Journal:  PLoS Genet       Date:  2009-01-23       Impact factor: 5.917

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  191 in total

Review 1.  Exploring the genetic basis of early-onset chronic kidney disease.

Authors:  Asaf Vivante; Friedhelm Hildebrandt
Journal:  Nat Rev Nephrol       Date:  2016-01-11       Impact factor: 28.314

Review 2.  New frontiers: discovering cilia-independent functions of cilia proteins.

Authors:  Anastassiia Vertii; Alison Bright; Benedicte Delaval; Heidi Hehnly; Stephen Doxsey
Journal:  EMBO Rep       Date:  2015-09-09       Impact factor: 8.807

3.  Mutations in MAPKBP1 Cause Juvenile or Late-Onset Cilia-Independent Nephronophthisis.

Authors:  Maxence S Macia; Jan Halbritter; Marion Delous; Cecilie Bredrup; Arthur Gutter; Emilie Filhol; Anne E C Mellgren; Sabine Leh; Albane Bizet; Daniela A Braun; Heon Y Gee; Flora Silbermann; Charline Henry; Pauline Krug; Christine Bole-Feysot; Patrick Nitschké; Dominique Joly; Philippe Nicoud; André Paget; Heidi Haugland; Damien Brackmann; Nayir Ahmet; Richard Sandford; Nurcan Cengiz; Per M Knappskog; Helge Boman; Bolan Linghu; Fan Yang; Edward J Oakeley; Pierre Saint Mézard; Andreas W Sailer; Stefan Johansson; Eyvind Rødahl; Sophie Saunier; Friedhelm Hildebrandt; Alexandre Benmerah
Journal:  Am J Hum Genet       Date:  2017-01-12       Impact factor: 11.025

Review 4.  The hallmarks of cancer: relevance to the pathogenesis of polycystic kidney disease.

Authors:  Tamina Seeger-Nukpezah; Daniel M Geynisman; Anna S Nikonova; Thomas Benzing; Erica A Golemis
Journal:  Nat Rev Nephrol       Date:  2015-04-14       Impact factor: 28.314

5.  Nek1 interacts with Ku80 to assist chromatin loading of replication factors and S-phase progression.

Authors:  Mallikarjun Patil; Navjotsingh Pabla; Han-Fei Ding; Zheng Dong
Journal:  Cell Cycle       Date:  2013-07-10       Impact factor: 4.534

Review 6.  Expanding horizons: ciliary proteins reach beyond cilia.

Authors:  Shiaulou Yuan; Zhaoxia Sun
Journal:  Annu Rev Genet       Date:  2013-09-06       Impact factor: 16.830

7.  Cilia born out of shock and stress.

Authors:  Pavithra L Chavali; Fanni Gergely
Journal:  EMBO J       Date:  2013-11-01       Impact factor: 11.598

Review 8.  Genetic characterization and disease mechanism of retinitis pigmentosa; current scenario.

Authors:  Muhammad Umar Ali; Muhammad Saif Ur Rahman; Jiang Cao; Ping Xi Yuan
Journal:  3 Biotech       Date:  2017-07-18       Impact factor: 2.406

9.  Phenotypic spectrum and prevalence of INPP5E mutations in Joubert syndrome and related disorders.

Authors:  Lorena Travaglini; Francesco Brancati; Jennifer Silhavy; Miriam Iannicelli; Elizabeth Nickerson; Nadia Elkhartoufi; Eric Scott; Emily Spencer; Stacey Gabriel; Sophie Thomas; Bruria Ben-Zeev; Enrico Bertini; Eugen Boltshauser; Malika Chaouch; Maria Roberta Cilio; Mirjam M de Jong; Hulya Kayserili; Gonul Ogur; Andrea Poretti; Sabrina Signorini; Graziella Uziel; Maha S Zaki; Colin Johnson; Tania Attié-Bitach; Joseph G Gleeson; Enza Maria Valente
Journal:  Eur J Hum Genet       Date:  2013-02-06       Impact factor: 4.246

10.  BRCA1 and FancJ cooperatively promote interstrand crosslinker induced centrosome amplification through the activation of polo-like kinase 1.

Authors:  Jianqiu Zou; Deli Zhang; Guang Qin; Xiangming Chen; Hongmin Wang; Dong Zhang
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

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