Literature DB >> 22858828

Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457.

Shailesh Kumar1, Hariom Kushwaha, Anand Kumar Bachhawat, Gajendra Pal Singh Raghava, Kaliannan Ganesan.   

Abstract

We report the de novo assembled 20.05-Mb draft genome of the red yeast Rhodosporidium toruloides MTCC 457, predicted to encode 5,993 proteins, 4 rRNAs, and 125 tRNAs. Proteins known to be unique to oleaginous fungi are present among the predicted proteins. The genome sequence will be valuable for molecular genetic analysis and manipulation of lipid accumulation in this yeast and for developing it as a potential host for biofuel production.

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Mesh：

Year:  2012        PMID： 22858828      PMCID： PMC3416060          DOI： 10.1128/EC.00156-12

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN： 1535-9786


  15 in total

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Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

2.  Morphological change in the early stages of the mating process of Rhodosporidium toruloides.

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Journal:  J Bacteriol       Date:  1975-05       Impact factor: 3.490

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Journal:  Genome Res       Date:  2007-11-19       Impact factor: 9.043

4.  Alternative routes of acetyl-CoA synthesis identified by comparative genomic analysis: involvement in the lipid production of oleaginous yeast and fungi.

Authors:  Tayvich Vorapreeda; Chinae Thammarongtham; Supapon Cheevadhanarak; Kobkul Laoteng
Journal:  Microbiology       Date:  2011-10-20       Impact factor: 2.777

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Transformation of Rhodosporidium toruloides.

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Journal:  Gene       Date:  1985       Impact factor: 3.688

7.  Identification of mating type genes in the bipolar basidiomycetous yeast Rhodosporidium toruloides: first insight into the MAT locus structure of the Sporidiobolales.

Authors:  Marco A Coelho; André Rosa; Nádia Rodrigues; Alvaro Fonseca; Paula Gonçalves
Journal:  Eukaryot Cell       Date:  2008-04-11

8.  ATP:citrate lyase of Rhodotorula gracilis: purification and properties.

Authors:  K Shashi; A K Bachhawat; R Joseph
Journal:  Biochim Biophys Acta       Date:  1990-01-29

9.  TopHat: discovering splice junctions with RNA-Seq.

Authors:  Cole Trapnell; Lior Pachter; Steven L Salzberg
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10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  21 in total

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Authors:  Yung-Yu Tsai; Takao Ohashi; Takenori Kanazawa; Pirapan Polburee; Ryo Misaki; Savitree Limtong; Kazuhito Fujiyama
Journal:  Curr Genet       Date:  2016-07-11       Impact factor: 3.886

Review 2.  Exploitation of genus Rhodosporidium for microbial lipid production.

Authors:  Jingyang Xu; Dehua Liu
Journal:  World J Microbiol Biotechnol       Date:  2017-02-20       Impact factor: 3.312

3.  Induction of resistance mechanisms in Rhodotorula toruloides for growth in sugarcane hydrolysate with high inhibitor content.

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Journal:  Appl Microbiol Biotechnol       Date:  2021-11-11       Impact factor: 4.813

Review 4.  Microbial production of fatty alcohols.

Authors:  Sandy Fillet; José L Adrio
Journal:  World J Microbiol Biotechnol       Date:  2016-07-27       Impact factor: 3.312

Review 5.  Red yeasts and carotenoid production: outlining a future for non-conventional yeasts of biotechnological interest.

Authors:  Ilaria Mannazzu; Sara Landolfo; Teresa Lopes da Silva; Pietro Buzzini
Journal:  World J Microbiol Biotechnol       Date:  2015-09-03       Impact factor: 3.312

6.  Manipulation of culture conditions alters lipid content and fatty acid profiles of a wide variety of known and new oleaginous yeast species.

Authors:  Irnayuli R Sitepu; Ryan Sestric; Laura Ignatia; David Levin; J Bruce German; Laura A Gillies; Luis A G Almada; Kyria L Boundy-Mills
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Journal:  Plant Physiol       Date:  2013-12-04       Impact factor: 8.340

8.  Eighteen new oleaginous yeast species.

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Journal:  J Ind Microbiol Biotechnol       Date:  2016-04-12       Impact factor: 3.346

9.  Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems.

Authors:  Robert Kourist; Felix Bracharz; Jan Lorenzen; Octavia N Kracht; Mansi Chovatia; Chris Daum; Shweta Deshpande; Anna Lipzen; Matt Nolan; Robin A Ohm; Igor V Grigoriev; Sheng Sun; Joseph Heitman; Thomas Brück; Minou Nowrousian
Journal:  MBio       Date:  2015-07-21       Impact factor: 7.867

10.  Metabolic network analysis and experimental study of lipid production in Rhodosporidium toruloides grown on single and mixed substrates.

Authors:  Rajesh Reddy Bommareddy; Wael Sabra; Garima Maheshwari; An-Ping Zeng
Journal:  Microb Cell Fact       Date:  2015-03-18       Impact factor: 5.328
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