Literature DB >> 2285796

Allosteric regulation, cooperativity, and biochemical oscillations.

A Goldbeter1, G Dupont.   

Abstract

Allosteric regulation is associated with a number of periodic phenomena in biochemical systems. The cooperative nature of such regulatory interactions provides a source of nonlinearity that favors oscillatory behavior. We assess the role of cooperativity in the onset of biochemical oscillations by analyzing two specific examples. First, we consider a model for a product-activated allosteric enzyme which has previously been proposed to account for glycolytic oscillations. While enzyme cooperativity plays an important role in the occurrence of oscillations, we show that these may nevertheless occur in the absence of cooperativity when the reaction product is removed in a Michaelian rather than linear manner. The second model considered was recently proposed to account for signal-induced oscillations of intracellular calcium. This phenomenon originates from a nonlinear process of calcium-induced calcium release. Here also, the cooperative nature of that positive feedback favors the occurrence of oscillations but is not absolutely required for periodic behavior. Besides underlining the importance of cooperativity, the results highlight the role of diffuse nonlinearities distributed over several steps within a regulated system: even in the absence of cooperativity, such mild nonlinearities (e.g., of the Michaelian type) may combine to raise the overall degree of nonlinearity up to the level required for oscillations.

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Year:  1990        PMID: 2285796     DOI: 10.1016/0301-4622(90)88033-o

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  11 in total

1.  Latency correlates with period in a model for signal-induced Ca2+ oscillations based on Ca2(+)-induced Ca2+ release.

Authors:  G Dupont; M J Berridge; A Goldbeter
Journal:  Cell Regul       Date:  1990-10

2.  Model of calcium oscillations due to negative feedback in olfactory cilia.

Authors:  J Reidl; P Borowski; A Sensse; J Starke; M Zapotocky; M Eiswirth
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

Review 3.  The role of modelling in identifying drug targets for diseases of the cell cycle.

Authors:  Robert G Clyde; James L Bown; Ted R Hupp; Nikolai Zhelev; John W Crawford
Journal:  J R Soc Interface       Date:  2006-10-22       Impact factor: 4.118

4.  Bistability and oscillations in chemical reaction networks.

Authors:  Mirela Domijan; Markus Kirkilionis
Journal:  J Math Biol       Date:  2008-11-21       Impact factor: 2.259

5.  Quantal release, incremental detection, and long-period Ca2+ oscillations in a model based on regulatory Ca2+-binding sites along the permeation pathway.

Authors:  G Dupont; S Swillens
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

6.  Does decreased mowing frequency enhance alkaloid production in endophytic tall fescue and perennial ryegrass?

Authors:  Seppo O Salminen; Parwinder S Grewal
Journal:  J Chem Ecol       Date:  2002-05       Impact factor: 2.626

7.  Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria.

Authors:  Yoshihiko Furuike; Atsushi Mukaiyama; Dongyan Ouyang; Kumiko Ito-Miwa; Damien Simon; Eiki Yamashita; Takao Kondo; Shuji Akiyama
Journal:  Sci Adv       Date:  2022-04-15       Impact factor: 14.957

8.  PPARs, Cardiovascular Metabolism, and Function: Near- or Far-from-Equilibrium Pathways.

Authors:  Yves Lecarpentier; Victor Claes; Jean-Louis Hébert
Journal:  PPAR Res       Date:  2010-07-27       Impact factor: 4.964

9.  Positive feedback promotes oscillations in negative feedback loops.

Authors:  Bharath Ananthasubramaniam; Hanspeter Herzel
Journal:  PLoS One       Date:  2014-08-15       Impact factor: 3.240

10.  Systematic computation of nonlinear cellular and molecular dynamics with low-power CytoMimetic circuits: a simulation study.

Authors:  Konstantinos I Papadimitriou; Guy-Bart V Stan; Emmanuel M Drakakis
Journal:  PLoS One       Date:  2013-02-05       Impact factor: 3.240

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