Literature DB >> 22855826

Eeny meeny miny moe, catch a transcript by the toe, or how to enumerate eukaryotic transcripts.

Terence R Strick1, Nouria Hernandez.   

Abstract

In this issue of Genes & Development, Revyakin and colleagues (pp. 1691-1702) measure the relation between individual RNA polymerase II transcription events and transcription factor assembly by counting RNA transcripts retained on the template DNA using single-molecule fluorescence.

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Year:  2012        PMID： 22855826      PMCID： PMC3418581          DOI： 10.1101/gad.199349.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  24 in total

1.  Applied force reveals mechanistic and energetic details of transcription termination.

Authors:  Matthew H Larson; William J Greenleaf; Robert Landick; Steven M Block
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

2.  Eukaryotic transcription initiation.

Authors:  Shankarling Krishnamurthy; Michael Hampsey
Journal:  Curr Biol       Date:  2009-02-24       Impact factor: 10.834

3.  A physiological role for gene loops in yeast.

Authors:  Jean-Philippe Lainé; Badri Nath Singh; Shankarling Krishnamurthy; Michael Hampsey
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

4.  A transcription-independent role for TFIIB in gene looping.

Authors:  Badri Nath Singh; Michael Hampsey
Journal:  Mol Cell       Date:  2007-09-07       Impact factor: 17.970

5.  Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner.

Authors:  Eric A Galburt; Stephan W Grill; Anna Wiedmann; Lucyna Lubkowska; Jason Choy; Eva Nogales; Mikhail Kashlev; Carlos Bustamante
Journal:  Nature       Date:  2007-03-14       Impact factor: 49.962

6.  Real-time DNA sequencing from single polymerase molecules.

Authors:  John Eid; Adrian Fehr; Jeremy Gray; Khai Luong; John Lyle; Geoff Otto; Paul Peluso; David Rank; Primo Baybayan; Brad Bettman; Arkadiusz Bibillo; Keith Bjornson; Bidhan Chaudhuri; Frederick Christians; Ronald Cicero; Sonya Clark; Ravindra Dalal; Alex Dewinter; John Dixon; Mathieu Foquet; Alfred Gaertner; Paul Hardenbol; Cheryl Heiner; Kevin Hester; David Holden; Gregory Kearns; Xiangxu Kong; Ronald Kuse; Yves Lacroix; Steven Lin; Paul Lundquist; Congcong Ma; Patrick Marks; Mark Maxham; Devon Murphy; Insil Park; Thang Pham; Michael Phillips; Joy Roy; Robert Sebra; Gene Shen; Jon Sorenson; Austin Tomaney; Kevin Travers; Mark Trulson; John Vieceli; Jeffrey Wegener; Dawn Wu; Alicia Yang; Denis Zaccarin; Peter Zhao; Frank Zhong; Jonas Korlach; Stephen Turner
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

7.  Synergistic action of RNA polymerases in overcoming the nucleosomal barrier.

Authors:  Jing Jin; Lu Bai; Daniel S Johnson; Robert M Fulbright; Maria L Kireeva; Mikhail Kashlev; Michelle D Wang
Journal:  Nat Struct Mol Biol       Date:  2010-05-09       Impact factor: 15.369

8.  Real-time tRNA transit on single translating ribosomes at codon resolution.

Authors:  Sotaro Uemura; Colin Echeverría Aitken; Jonas Korlach; Benjamin A Flusberg; Stephen W Turner; Joseph D Puglisi
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

9.  Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays.

Authors:  Andrew J Bonham; Thorsten Neumann; Matthew Tirrell; Norbert O Reich
Journal:  Nucleic Acids Res       Date:  2009-05-31       Impact factor: 16.971

10.  Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

Authors:  Courtney Hodges; Lacramioara Bintu; Lucyna Lubkowska; Mikhail Kashlev; Carlos Bustamante
Journal:  Science       Date:  2009-07-31       Impact factor: 47.728
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