Literature DB >> 22849616

Strategies for the generation, validation and application of in silico ADMET models in lead generation and optimization.

Matthew Paul Gleeson1, Dino Montanari.   

Abstract

INTRODUCTION: The most desirable chemical starting point in drug discovery is a hit or lead with a good overall profile, and where there may be issues; a clear SAR strategy should be identifiable to minimize the issue. Filtering based on drug-likeness concepts are a first step, but more accurate theoretical methods are needed to i) estimate the biological profile of molecule in question and ii) based on the underlying structure-activity relationships used by the model, estimate whether it is likely that the molecule in question can be altered to remove these liabilities. AREAS COVERED: In this paper, the authors discuss the generation of ADMET models and their practical use in decision making. They discuss the issues surrounding data collation, experimental errors, the model assessment and validation steps, as well as the different types of descriptors and statistical models that can be used. This is followed by a discussion on how the model accuracy will dictate when and where it can be used in the drug discovery process. The authors also discuss how models can be developed to more effectively enable multiple parameter optimization. EXPERT OPINION: Models can be applied in lead generation and lead optimization steps to i) rank order a collection of hits, ii) prioritize the experimental assays needed for different hit series, iii) assess the likelihood of resolving a problem that might be present in a particular series in lead optimization and iv) screen a virtual library based on a hit or lead series to assess the impact of diverse structural changes on the predicted properties.

Entities:  

Mesh:

Year:  2012        PMID: 22849616     DOI: 10.1517/17425255.2012.711317

Source DB:  PubMed          Journal:  Expert Opin Drug Metab Toxicol        ISSN: 1742-5255            Impact factor:   4.481


  3 in total

1.  Time dependent analysis of assay comparability: a novel approach to understand intra- and inter-site variability over time.

Authors:  Susanne Winiwarter; Brian Middleton; Barry Jones; Paul Courtney; Bo Lindmark; Ken M Page; Alan Clark; Claire Landqvist
Journal:  J Comput Aided Mol Des       Date:  2015-02-20       Impact factor: 3.686

2.  QSAR with experimental and predictive distributions: an information theoretic approach for assessing model quality.

Authors:  David J Wood; Lars Carlsson; Martin Eklund; Ulf Norinder; Jonna Stålring
Journal:  J Comput Aided Mol Des       Date:  2013-03-16       Impact factor: 3.686

Review 3.  Towards reproducible computational drug discovery.

Authors:  Nalini Schaduangrat; Samuel Lampa; Saw Simeon; Matthew Paul Gleeson; Ola Spjuth; Chanin Nantasenamat
Journal:  J Cheminform       Date:  2020-01-28       Impact factor: 5.514

  3 in total

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