Literature DB >> 22847108

CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics.

Vishal R Patel, Kristin Eckel-Mahan, Paolo Sassone-Corsi, Pierre Baldi.   

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Year:  2012        PMID： 22847108     DOI： 10.1038/nmeth.2111

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Coordination of the transcriptome and metabolome by the circadian clock.

Authors:  Kristin L Eckel-Mahan; Vishal R Patel; Robert P Mohney; Katie S Vignola; Pierre Baldi; Paolo Sassone-Corsi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

3.  Metabolism control by the circadian clock and vice versa.

Authors:  Kristin Eckel-Mahan; Paolo Sassone-Corsi
Journal:  Nat Struct Mol Biol       Date:  2009-05       Impact factor: 15.369

4.  MotifMap: a human genome-wide map of candidate regulatory motif sites.

Authors:  Xiaohui Xie; Paul Rigor; Pierre Baldi
Journal:  Bioinformatics       Date:  2008-11-18       Impact factor: 6.937

5.  Harmonics of circadian gene transcription in mammals.

Authors:  Michael E Hughes; Luciano DiTacchio; Kevin R Hayes; Christopher Vollmers; S Pulivarthy; Julie E Baggs; Satchidananda Panda; John B Hogenesch
Journal:  PLoS Genet       Date:  2009-04-03       Impact factor: 5.917
  5 in total
  51 in total

Review 1.  Circadian molecular clock in lung pathophysiology.

Authors:  Isaac K Sundar; Hongwei Yao; Michael T Sellix; Irfan Rahman
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2015-09-11       Impact factor: 5.464

Review 2.  Proteomics of the Synapse--A Quantitative Approach to Neuronal Plasticity.

Authors:  Daniela C Dieterich; Michael R Kreutz
Journal:  Mol Cell Proteomics       Date:  2015-08-25       Impact factor: 5.911

3.  Comparative Circadian Metabolomics Reveal Differential Effects of Nutritional Challenge in the Serum and Liver.

Authors:  Serena Abbondante; Kristin L Eckel-Mahan; Nicholas J Ceglia; Pierre Baldi; Paolo Sassone-Corsi
Journal:  J Biol Chem       Date:  2015-12-07       Impact factor: 5.157

4.  Pharmacokinetics of Irinotecan, Oxaliplatin and 5-Fluorouracil During Hepatic Artery Chronomodulated Infusion: A Translational European OPTILIV Study.

Authors:  Francis Lévi; Abdoulaye Karaboué; Marie-Christine Etienne-Grimaldi; Gilles Paintaud; Christian Focan; Pasquale Innominato; Mohamed Bouchahda; Gérard Milano; Etienne Chatelut
Journal:  Clin Pharmacokinet       Date:  2017-02       Impact factor: 6.447

5.  Isotope Labeling-Assisted Evaluation of Hydrophilic and Hydrophobic Liquid Chromatograph-Mass Spectrometry for Metabolomics Profiling.

Authors:  Boer Xie; Yuanyuan Wang; Drew R Jones; Kaushik Kumar Dey; Xusheng Wang; Yuxin Li; Ji-Hoon Cho; Timothy I Shaw; Haiyan Tan; Junmin Peng
Journal:  Anal Chem       Date:  2018-06-25       Impact factor: 6.986

6.  Fasting Imparts a Switch to Alternative Daily Pathways in Liver and Muscle.

Authors:  Kenichiro Kinouchi; Christophe Magnan; Nicholas Ceglia; Yu Liu; Marlene Cervantes; Nunzia Pastore; Tuong Huynh; Andrea Ballabio; Pierre Baldi; Selma Masri; Paolo Sassone-Corsi
Journal:  Cell Rep       Date:  2018-12-18       Impact factor: 9.423

7.  The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework.

Authors:  Vishal R Patel; Nicholas Ceglia; Michael Zeller; Kristin Eckel-Mahan; Paolo Sassone-Corsi; Pierre Baldi
Journal:  Bioinformatics       Date:  2015-06-06       Impact factor: 6.937

8.  Atlas of Circadian Metabolism Reveals System-wide Coordination and Communication between Clocks.

Authors:  Kenneth A Dyar; Dominik Lutter; Anna Artati; Nicholas J Ceglia; Yu Liu; Danny Armenta; Martin Jastroch; Sandra Schneider; Sara de Mateo; Marlene Cervantes; Serena Abbondante; Paola Tognini; Ricardo Orozco-Solis; Kenichiro Kinouchi; Christina Wang; Ronald Swerdloff; Seba Nadeef; Selma Masri; Pierre Magistretti; Valerio Orlando; Emiliana Borrelli; N Henriette Uhlenhaut; Pierre Baldi; Jerzy Adamski; Matthias H Tschöp; Kristin Eckel-Mahan; Paolo Sassone-Corsi
Journal:  Cell       Date:  2018-09-06       Impact factor: 41.582

Review 9.  The circadian epigenome: how metabolism talks to chromatin remodeling.

Authors:  Lorena Aguilar-Arnal; Paolo Sassone-Corsi
Journal:  Curr Opin Cell Biol       Date:  2013-02-04       Impact factor: 8.382

10.  Metabolomic Profiling of Human Urine as a Screen for Multiple Inborn Errors of Metabolism.

Authors:  Adam D Kennedy; Marcus J Miller; Kirk Beebe; Jacob E Wulff; Anne M Evans; Luke A D Miller; V Reid Sutton; Qin Sun; Sarah H Elsea
Journal:  Genet Test Mol Biomarkers       Date:  2016-07-22
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