Literature DB >> 22846923

Explaining reaction mechanisms using the dual descriptor: a complementary tool to the molecular electrostatic potential.

Jorge Ignacio Martínez-Araya1.   

Abstract

The intrinsic reactivity of cyanide when interacting with a silver cation was rationalized using the dual descriptor (DD) as a complement to the molecular electrostatic potential (MEP) in order to predict interactions at the local level. It was found that DD accurately explains covalent interactions that cannot be explained by MEP, which focuses on essentially ionic interactions. This allowed the rationalization of the reaction mechanism that yields silver cyanide in the gas phase. Other similar reaction mechanisms involving a silver cation interacting with water, ammonia, and thiosulfate were also explained by the combination of MEP and DD. This analysis provides another example of the usefulness of DD as a tool for gaining a deeper understanding of any reaction mechanism that is mainly governed by covalent interactions.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22846923     DOI: 10.1007/s00894-012-1520-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  9 in total

1.  Conceptual density functional theory.

Authors:  P Geerlings; F De Proft; W Langenaeker
Journal:  Chem Rev       Date:  2003-05       Impact factor: 60.622

2.  Symmetry Conservation in Fukui Functions.

Authors:  Roberto Flores-Moreno
Journal:  J Chem Theory Comput       Date:  2010-01-12       Impact factor: 6.006

3.  New dual descriptor for chemical reactivity.

Authors:  Christophe Morell; André Grand; Alejandro Toro-Labbé
Journal:  J Phys Chem A       Date:  2005-01-13       Impact factor: 2.781

4.  Understanding the Woodward-Hoffmann rules by using changes in electron density.

Authors:  Paul W Ayers; Christophe Morell; Frank De Proft; Paul Geerlings
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

5.  Rationalization of Diels-Alder reactions through the use of the dual reactivity descriptor Deltaf(r).

Authors:  Christophe Morell; Paul W Ayers; André Grand; Soledad Gutiérrez-Oliva; Alejandro Toro-Labbé
Journal:  Phys Chem Chem Phys       Date:  2008-10-23       Impact factor: 3.676

6.  Chemical reactivity descriptors for ambiphilic reagents: dual descriptor, local hypersoftness, and electrostatic potential.

Authors:  Carlos Cárdenas; Nataly Rabi; Paul W Ayers; Christophe Morell; Paula Jaramillo; Patricio Fuentealba
Journal:  J Phys Chem A       Date:  2009-07-30       Impact factor: 2.781

7.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

8.  Density-functional exchange-energy approximation with correct asymptotic behavior.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

9.  The dual descriptor to measure local reactivity on Buckminster fullerenes: an analysis within the framework of conceptual DFT.

Authors:  Jorge Ignacio Martínez; José Luis Moncada; José Miguel Larenas
Journal:  J Mol Model       Date:  2010-03-10       Impact factor: 1.810

  9 in total
  12 in total

1.  An integrated molecular modeling protocol for drug screening based on conceptual density functional theory and chemoinformatics for the study of marine cyclopeptides.

Authors:  Norma Flores-Holguín; Juan Frau; Daniel Glossman-Mitnik
Journal:  J Mol Model       Date:  2021-10-08       Impact factor: 1.810

2.  Chemical Reactivity Properties, pKa Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A⁻H Peptides of Marine Origin Studied by Means of Conceptual DFT.

Authors:  Juan Frau; Norma Flores-Holguín; Daniel Glossman-Mitnik
Journal:  Mar Drugs       Date:  2018-08-28       Impact factor: 5.118

3.  Calculation of the Global and Local Conceptual DFT Indices for the Prediction of the Chemical Reactivity Properties of Papuamides A-F Marine Drugs.

Authors:  Norma Flores-Holguín; Juan Frau; Daniel Glossman-Mitnik
Journal:  Molecules       Date:  2019-09-11       Impact factor: 4.411

4.  Computational peptidology approach to the study of the chemical reactivity and bioactivity properties of Aspergillipeptide D, a cyclopentapeptide of marine origin.

Authors:  Norma Flores-Holguín; Juan Frau; Daniel Glossman-Mitnik
Journal:  Sci Rep       Date:  2022-01-11       Impact factor: 4.379

5.  Virtual Screening for Potential Phytobioactives as Therapeutic Leads to Inhibit NQO1 for Selective Anticancer Therapy.

Authors:  Bhargav Shreevatsa; Chandan Dharmashekara; Vikas Halasumane Swamy; Meghana V Gowda; Raghu Ram Achar; Vivek Hamse Kameshwar; Rajesh Kumar Thimmulappa; Asad Syed; Abdallah M Elgorban; Salim S Al-Rejaie; Joaquín Ortega-Castro; Juan Frau; Norma Flores-Holguín; Chandan Shivamallu; Shiva Prasad Kollur; Daniel Glossman-Mitnik
Journal:  Molecules       Date:  2021-11-14       Impact factor: 4.411

6.  Conceptual DFT-Based Computational Peptidology, Pharmacokinetics Study and ADMET Report of the Veraguamides A-G Family of Marine Natural Drugs.

Authors:  Norma Flores-Holguín; Joaquín Ortega-Castro; Juan Frau; Daniel Glossman-Mitnik
Journal:  Mar Drugs       Date:  2022-01-24       Impact factor: 5.118

7.  The Dual Descriptor Reveals the Janus-Faced Behaviour of Diiodine.

Authors:  Jorge I Martínez-Araya
Journal:  Front Chem       Date:  2022-03-24       Impact factor: 5.221

8.  Computational Pharmacokinetics Report, ADMET Study and Conceptual DFT-Based Estimation of the Chemical Reactivity Properties of Marine Cyclopeptides.

Authors:  Norma Flores-Holguín; Juan Frau; Daniel Glossman-Mitnik
Journal:  ChemistryOpen       Date:  2021-11       Impact factor: 2.911

9.  Virtual Screening of Marine Natural Compounds by Means of Chemoinformatics and CDFT-Based Computational Peptidology.

Authors:  Norma Flores-Holguín; Juan Frau; Daniel Glossman-Mitnik
Journal:  Mar Drugs       Date:  2020-09-20       Impact factor: 5.118

10.  Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A-H.

Authors:  Norma Flores-Holguín; Juan Frau; Daniel Glossman-Mitnik
Journal:  Molecules       Date:  2020-09-11       Impact factor: 4.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.