Literature DB >> 22843859

Complete genome sequence of phytopathogenic Pectobacterium carotovorum subsp. carotovorum bacteriophage PP1.

Ju-Hoon Lee1, Hakdong Shin, Samnyu Ji, Shweta Malhotra, Mukesh Kumar, Sangryeol Ryu, Sunggi Heu.   

Abstract

Pectobacterium carotovorum subsp. carotovorum is a phytopathogen causing soft rot disease on diverse plant species. To control this plant pathogen, P. carotovorum subsp. carotovorum-targeting bacteriophage PP1 was isolated and its genome was completely sequenced to develop a novel biocontrol agent. Interestingly, the 44,400-bp genome sequence does not encode any gene involved in the formation of lysogen, suggesting that this phage may be very useful as a biocontrol agent because it does not make lysogen after host infection. This is the first report on the complete genome sequence of the P. carotovorum subsp. carotovorum-targeting bacteriophage, and it will enhance our understanding of the interaction between phytopathogens and their targeting bacteriophages.

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Year:  2012        PMID： 22843859      PMCID： PMC3421750          DOI： 10.1128/JVI.01283-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  12 in total

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2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

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4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  Characterization of a new bacteriocin, Carocin D, from Pectobacterium carotovorum subsp. carotovorum Pcc21.

Authors:  Eunjung Roh; Tae-Ho Park; Myung-Il Kim; Seungdon Lee; Sangryeol Ryu; Chang-Sik Oh; Sangkee Rhee; Doo-Ho Kim; Beom-Seok Park; Sunggi Heu
Journal:  Appl Environ Microbiol       Date:  2010-09-24       Impact factor: 4.792

6.  Complete genome sequences of three Erwinia amylovora phages isolated in north america and a bacteriophage induced from an Erwinia tasmaniensis strain.

Authors:  I Müller; M Kube; R Reinhardt; W Jelkmann; K Geider
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7.  Rapid isolation of recombinant lambda phage DNA for use in fluorescence in situ hybridization.

Authors:  S A Wilcox; R Toder; J W Foster
Journal:  Chromosome Res       Date:  1996-08       Impact factor: 5.239

8.  Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov.

Authors:  Louis Gardan; Cécile Gouy; Richard Christen; Régine Samson
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

9.  Complete genome of the broad-host-range Erwinia amylovora phage phiEa21-4 and its relationship to Salmonella phage felix O1.

Authors:  Susan M Lehman; Andrew M Kropinski; Alan J Castle; Antonet M Svircev
Journal:  Appl Environ Microbiol       Date:  2009-01-30       Impact factor: 4.792

10.  The 3-hydroxy-2-butanone pathway is required for Pectobacterium carotovorum pathogenesis.

Authors:  Maria del Pilar Marquez-Villavicencio; Brooke Weber; R Andrews Witherell; David K Willis; Amy O Charkowski
Journal:  PLoS One       Date:  2011-08-18       Impact factor: 3.240
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  7 in total

1.  Complete genome sequence of Pectobacterium carotovorum subsp. carotovorum bacteriophage My1.

Authors:  Dong Hwan Lee; Ju-Hoon Lee; Hakdong Shin; Samnyu Ji; Eunjung Roh; Kyusuk Jung; Sangryeol Ryu; Jaehyuk Choi; Sunggi Heu
Journal:  J Virol       Date:  2012-10       Impact factor: 5.103

2.  Complete Genome Sequence of Phytopathogenic Pectobacterium atrosepticum Bacteriophage Peat1.

Authors:  Melanie Kalischuk; John Hachey; Lawrence Kawchuk
Journal:  Genome Announc       Date:  2015-08-13

3.  Isolation and Genomic Characterization of the T4-Like Bacteriophage PM2 Infecting Pectobacterium carotovorum subsp. carotovorum.

Authors:  Jeong-A Lim; Dong Hwan Lee; Sunggi Heu
Journal:  Plant Pathol J       Date:  2015-03-31       Impact factor: 1.795

4.  Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms.

Authors:  Hisae Hirata; Misako Kashihara; Tokumasa Horiike; Tomohiro Suzuki; Hideo Dohra; Osamu Netsu; Shinji Tsuyumu
Journal:  Genome Announc       Date:  2016-04-21

5.  Comparative Functional Genomic Analysis of Two Vibrio Phages Reveals Complex Metabolic Interactions with the Host Cell.

Authors:  Dimitrios Skliros; Panos G Kalatzis; Pantelis Katharios; Emmanouil Flemetakis
Journal:  Front Microbiol       Date:  2016-11-14       Impact factor: 5.640

6.  Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection.

Authors:  Anna A Lukianova; Mikhail M Shneider; Peter V Evseev; Anna M Shpirt; Eugenia N Bugaeva; Anastasia P Kabanova; Ekaterina A Obraztsova; Kirill K Miroshnikov; Sofiya N Senchenkova; Alexander S Shashkov; Stepan V Toschakov; Yuriy A Knirel; Alexander N Ignatov; Konstantin A Miroshnikov
Journal:  Front Microbiol       Date:  2020-01-23       Impact factor: 5.640

Review 7.  Classification and Taxonomy of Vegetable Macergens.

Authors:  Bukola R Aremu; Olubukola O Babalola
Journal:  Front Microbiol       Date:  2015-11-27       Impact factor: 5.640
  7 in total

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