Literature DB >> 22843855

Complete genome sequence of a novel type of human parechovirus strain reveals natural recombination events.

Guangming Sun1, Yong Wang, Gang Tao, Quan Shen, Weiping Cao, Xianlu Chang, Wen Zhang, Chen Shao, Miaoli Yi, Shihe Shao, Yan Yang.   

Abstract

Human parechoviruses (HPeVs) are a species in the Parechovirus genus of the Picornaviridae family. We report a complete genome sequence of a novel HPeV strain, CH-ZJ1, that was found in an infant with gastroenteritis in Zhenjiang City, China. The complete genome consists of 7,298 nucleotides (nt), excluding the 3' poly(A) tail; the open reading frame is mapped between nucleotide positions 654 and 7211 and encodes a 2,185-amino acid (aa) polyprotein. The phylogenetic tree obtained for the complete genome of this HPeV strain and the other HpeV strains available in GenBank indicated that CH-ZJ1 is intervenient between HpeV type 4 (HpeV4) and HpeV5. Phylogenetic analysis based on the 3D and VP1 genes reveals two incongruent trees. Recombination detection indicated that CH-ZJ1 might be a recombinant which was produced by more than one genomic recombination event that occurred among HPeV1, HPeV4, and HPeV3 strains.

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Year:  2012        PMID： 22843855      PMCID： PMC3421728          DOI： 10.1128/JVI.01241-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  18 in total

Review 1.  Regulation of picornavirus gene expression.

Authors:  Kristin M Bedard; Bert L Semler
Journal:  Microbes Infect       Date:  2004-06       Impact factor: 2.700

2.  Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens.

Authors:  W Allan Nix; M Steven Oberste; Mark A Pallansch
Journal:  J Clin Microbiol       Date:  2006-08       Impact factor: 5.948

3.  Analysis of a new human parechovirus allows the definition of parechovirus types and the identification of RNA structural domains.

Authors:  Mohammed Al-Sunaidi; Cigdem H Williams; Pamela J Hughes; David P Schnurr; Glyn Stanway
Journal:  J Virol       Date:  2006-09-27       Impact factor: 5.103

Review 4.  New insights into internal ribosome entry site elements relevant for viral gene expression.

Authors:  Encarnación Martínez-Salas; Almudena Pacheco; Paula Serrano; Noemi Fernandez
Journal:  J Gen Virol       Date:  2008-03       Impact factor: 3.891

5.  Molecular epidemiology, genome characterization, and recombination event of human parechovirus.

Authors:  Thaweesak Chieochansin; Preeyaporn Vichiwattana; Sumeth Korkong; Apiradee Theamboonlers; Yong Poovorawan
Journal:  Virology       Date:  2011-10-21       Impact factor: 3.616

6.  Human enterovirus 109: a novel interspecies recombinant enterovirus isolated from a case of acute pediatric respiratory illness in Nicaragua.

Authors:  Nathan L Yozwiak; Peter Skewes-Cox; Aubree Gordon; Saira Saborio; Guillermina Kuan; Angel Balmaseda; Don Ganem; Eva Harris; Joseph L DeRisi
Journal:  J Virol       Date:  2010-06-30       Impact factor: 5.103

7.  Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis.

Authors:  Joseph G Victoria; Amit Kapoor; Linlin Li; Olga Blinkova; Beth Slikas; Chunlin Wang; Asif Naeem; Sohail Zaidi; Eric Delwart
Journal:  J Virol       Date:  2009-02-11       Impact factor: 5.103

8.  Complete sequence of echovirus 23 and its relationship to echovirus 22 and other human enteroviruses.

Authors:  M S Oberste; K Maher; M A Pallansch
Journal:  Virus Res       Date:  1998-08       Impact factor: 3.303

9.  Identification and characterization of two strains of human parechovirus 4 isolated from two clinical cases in Fukuoka City, Japan.

Authors:  Kiyoko Wakatsuki; Daisuke Kawamoto; Hiroshi Hiwaki; Kanako Watanabe; Hiromu Yoshida
Journal:  J Clin Microbiol       Date:  2008-07-23       Impact factor: 5.948

10.  Fourth human parechovirus serotype.

Authors:  Kimberley S M Benschop; Janke Schinkel; Manon E Luken; Peter J M van den Broek; Matthias F C Beersma; Negassi Menelik; Hetty W M van Eijk; Hans L Zaaijer; Christina M J E VandenBroucke-Grauls; Marcel G H M Beld; Katja C Wolthers
Journal:  Emerg Infect Dis       Date:  2006-10       Impact factor: 6.883
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  5 in total

1.  Cluster of human parechovirus infections as the predominant cause of sepsis in neonates and infants, Leicester, United Kingdom, 8 May to 2 August 2016.

Authors:  Julian W Tang; Christopher W Holmes; Fadwa A Elsanousi; Ayushi Patel; Fazila Adam; Rachel Speight; Savitha Shenoy; Daniel Bronnert; Gary Stiefel; Premkumar Sundaram; Suchandra Pande; Arani Sridhar; Venkatesh Kairamkonda; Srini Bandi
Journal:  Euro Surveill       Date:  2016-08-25

2.  The Complete Genome Sequence of a Human Parechovirus from a Child with Diarrhea in China Revealed Intertypic Recombination.

Authors:  Xiaoying Zhao; Chenglin Zhou; Xiaodan Zhang; Wang Li; Xinyu Wan; Yan Wang; Yuming Zeng; Wen Zhang
Journal:  Genome Announc       Date:  2017-05-25

3.  Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses.

Authors:  Claude Kwe Yinda; Emiel Vanhulle; Nádia Conceição-Neto; Leen Beller; Ward Deboutte; Chenyan Shi; Stephen Mbigha Ghogomu; Piet Maes; Marc Van Ranst; Jelle Matthijnssens
Journal:  mSphere       Date:  2019-01-23       Impact factor: 4.389

4.  The particulars on parechovirus.

Authors:  Gauri Shah; Joan L Robinson
Journal:  Can J Infect Dis Med Microbiol       Date:  2014-07       Impact factor: 2.471

5.  The Structure of Human Parechovirus 1 Reveals an Association of the RNA Genome with the Capsid.

Authors:  Sergei Kalynych; Lenka Pálková; Pavel Plevka
Journal:  J Virol       Date:  2015-11-18       Impact factor: 5.103
  5 in total

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