Literature DB >> 22843597

Genome sequence of Staphylococcus capitis QN1, which causes infective endocarditis.

Nan Qin1, Wenchao Ding, Jian Yao, Kunkai Su, Lingjiao Wu, Lanjuan Li.   

Abstract

Staphylococcus capitis is a subtype of coagulase-negative staphylococci (CoNS) which could emerge as a significant pathogen causing infective endocarditis, prosthetic valve endocarditis, and late-onset sepsis. We isolated S. capitis strain QN1 from the skin swab sample of a female. Here we prepared a genome sequence for this strain consisting of 30 contigs totaling 2,430,101 bases and a GC content of 32.76%.

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Year:  2012        PMID： 22843597      PMCID： PMC3416214          DOI： 10.1128/JB.00827-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Infective endocarditis due to Staphylococcus capitis.

Authors:  B Lina; M Celard; F Vandenesch; A Ribier; J P Delahaye; J Etienne
Journal:  Clin Infect Dis       Date:  1992-07       Impact factor: 9.079

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 7.  Pathogenesis of infections due to coagulase-negative staphylococci.

Authors:  Christof von Eiff; Georg Peters; Christine Heilmann
Journal:  Lancet Infect Dis       Date:  2002-11       Impact factor: 25.071

8.  Methicillin-resistant Staphylococcus capitis with reduced vancomycin susceptibility causes late-onset sepsis in intensive care neonates.

Authors:  Jean-Philippe Rasigade; Olivia Raulin; Jean-Charles Picaud; Charlotte Tellini; Michele Bes; Jacqueline Grando; Mohamed Ben Saïd; Olivier Claris; Jerome Etienne; Sylvestre Tigaud; Frederic Laurent
Journal:  PLoS One       Date:  2012-02-14       Impact factor: 3.240

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  KAAS: an automatic genome annotation and pathway reconstruction server.

Authors:  Yuki Moriya; Masumi Itoh; Shujiro Okuda; Akiyasu C Yoshizawa; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2007-05-25       Impact factor: 16.971
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  3 in total

1.  Characterization of a novel composite staphylococcal cassette chromosome mec (SCCmec-SCCcad/ars/cop) in the neonatal sepsis-associated Staphylococcus capitis pulsotype NRCS-A.

Authors:  P Martins Simões; J-P Rasigade; H Lemriss; M Butin; C Ginevra; S Lemriss; R V Goering; A Ibrahimi; J C Picaud; S El Kabbaj; F Vandenesch; F Laurent
Journal:  Antimicrob Agents Chemother       Date:  2013-09-23       Impact factor: 5.191

2.  Whole genome sequence and comparative genomic analysis of multidrug-resistant Staphylococcus capitis subsp. urealyticus strain LNZR-1.

Authors:  Xiaoxia Li; Min Lei; Yanli Song; Kunwei Gong; Ling Li; Hongyan Liang; Xiaofeng Jiang
Journal:  Gut Pathog       Date:  2014-12-20       Impact factor: 4.181

3.  Skin Commensal Staphylococci May Act as Reservoir for Fusidic Acid Resistance Genes.

Authors:  Wei-Chun Hung; Hsiao-Jan Chen; Yu-Tzu Lin; Jui-Chang Tsai; Chiao-Wei Chen; Hsiao-Hung Lu; Sung-Pin Tseng; Yao-Yu Jheng; Kin Hong Leong; Lee-Jene Teng
Journal:  PLoS One       Date:  2015-11-18       Impact factor: 3.240
  3 in total

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