Literature DB >> 22843596

Genome sequence of Pediococcus pentosaceus strain IE-3.

Samriti Midha1, Manish Ranjan, Vikas Sharma, Annu Kumari, Pradip Kumar Singh, Suresh Korpole, Prabhu B Patil.   

Abstract

We report the 1.8-Mb genome sequence of Pediococcus pentosaceus strain IE-3, isolated from a dairy effluent sample. The whole-genome sequence of this strain will aid in comparative genomics of Pediococcus pentosaceus strains of diverse ecological origins and their biotechnological applications.

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Year:  2012        PMID： 22843596      PMCID： PMC3416253          DOI： 10.1128/JB.00897-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  4 in total

1.  Comparative genomics of the lactic acid bacteria.

Authors:  K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

2.  Pediococci residing on plants.

Authors:  J O Mundt; W G Beattie; F R Wieland
Journal:  J Bacteriol       Date:  1969-06       Impact factor: 3.490

3.  The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Authors:  F Meyer; D Paarmann; M D'Souza; R Olson; E M Glass; M Kubal; T Paczian; A Rodriguez; R Stevens; A Wilke; J Wilkening; R A Edwards
Journal:  BMC Bioinformatics       Date:  2008-09-19       Impact factor: 3.169

4.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  4 in total
  8 in total

1.  Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment.

Authors:  Isabel Snauwaert; Pieter Stragier; Luc De Vuyst; Peter Vandamme
Journal:  BMC Genomics       Date:  2015-04-03       Impact factor: 3.969

2.  A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcus pentosaceus strain IE-3 shows increased activity under reducing environment.

Authors:  Pradip K Singh; Shalley Sharma; Annu Kumari; Suresh Korpole
Journal:  BMC Microbiol       Date:  2014-08-27       Impact factor: 3.605

3.  Whole-genome sequence assembly of Pediococcus pentosaceus LI05 (CGMCC 7049) from the human gastrointestinal tract and comparative analysis with representative sequences from three food-borne strains.

Authors:  Long-Xian Lv; Yu-Dong Li; Xin-Jun Hu; Hai-Yan Shi; Lan-Juan Li
Journal:  Gut Pathog       Date:  2014-08-30       Impact factor: 4.181

4.  Draft Genome Sequence of Pediococcus pentosaceus Strain FBL2, a Probiotic Bacterium Isolated from Jogaejeot, a Salted Fermented Food, in the Republic of Korea.

Authors:  Eiseul Kim; Jae-Hwan Kim; Saet-Byul Park; Mi-Ju Kim; Hyun-Joong Kim; Chang-Gyeom Kim; Dong-Won Choo; Hae-Yeong Kim
Journal:  Genome Announc       Date:  2017-05-04

5.  Characterization of the LP28 strain-specific exopolysaccharide biosynthetic gene cluster found in the whole circular genome of Pediococcus pentosaceus.

Authors:  Tetsuya Yasutake; Takanori Kumagai; Atsushi Inoue; Koei Kobayashi; Masafumi Noda; Asumi Orikawa; Yasuyuki Matoba; Masanori Sugiyama
Journal:  Biochem Biophys Rep       Date:  2016-01-08

6.  In vitro Assessment of the Probiotic Properties and Bacteriocinogenic Potential of Pediococcus pentosaceus MZF16 Isolated From Artisanal Tunisian Meat "Dried Ossban".

Authors:  Mohamed Zommiti; Emeline Bouffartigues; Olivier Maillot; Magalie Barreau; Sabine Szunerits; Khaled Sebei; Marc Feuilloley; Nathalie Connil; Mounir Ferchichi
Journal:  Front Microbiol       Date:  2018-11-09       Impact factor: 5.640

7.  Draft Genome Sequence of Pediococcus lolii NGRI 0510Q(T) Isolated from Ryegrass Silage.

Authors:  Katsumi Doi; Kazuki Mori; Kosuke Tashiro; Yasuhiro Fujino; Yuko Nagayoshi; Yoshiharu Hayashi; Satoru Kuhara; Toshihisa Ohshima
Journal:  Genome Announc       Date:  2013-02-07

8.  Complete Genome Sequence of Pediococcus pentosaceus Strain SL4.

Authors:  Shruti Harnal Dantoft; Eliza Maria Bielak; Jae-Gu Seo; Myung-Jun Chung; Peter Ruhdal Jensen
Journal:  Genome Announc       Date:  2013-12-26
  8 in total

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