Literature DB >> 22843588

Draft genome sequence of the sponge-associated strain Bacillus atrophaeus C89, a potential producer of marine drugs.

Fang Liu1, Wei Sun, Fei Su, Kang Zhou, Zhiyong Li.   

Abstract

Bacillus atrophaeus C89, isolated from the marine sponge Dysidea avara, is a potential producer of bioactive compounds, such as neobacillamide A and bacillamide C. Here, we present a 4.2-Mb assembly of its genome. The nonribosomal peptide synthetases (NRPSs) make it possible to produce the bioactive compounds.

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Year:  2012        PMID： 22843588      PMCID： PMC3416270          DOI： 10.1128/JB.00835-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

Review 2.  Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.

Authors:  Michael W Taylor; Regina Radax; Doris Steger; Michael Wagner
Journal:  Microbiol Mol Biol Rev       Date:  2007-06       Impact factor: 11.056

Review 3.  Metropolitan microbes: type III secretion in multihost symbionts.

Authors:  Gail M Preston
Journal:  Cell Host Microbe       Date:  2007-11-15       Impact factor: 21.023

4.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

5.  Computation with the KEGG pathway database.

Authors:  H Ogata; S Goto; W Fujibuchi; M Kanehisa
Journal:  Biosystems       Date:  1998 Jun-Jul       Impact factor: 1.973

6.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

7.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
  7 in total
  4 in total

1.  Substrate selection of adenylation domains for nonribosomal peptide synthetase (NRPS) in bacillamide C biosynthesis by marine Bacillus atrophaeus C89.

Authors:  Fengli Zhang; Yukun Wang; Qun Jiang; Qihua Chen; Loganathan Karthik; Yi-Lei Zhao; Zhiyong Li
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-24       Impact factor: 3.346

2.  The role of aromatic L-amino acid decarboxylase in bacillamide C biosynthesis by Bacillus atrophaeus C89.

Authors:  Lei Yuwen; Feng-Li Zhang; Qi-Hua Chen; Shuang-Jun Lin; Yi-Lei Zhao; Zhi-Yong Li
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

3.  Antimicrobial activities of secondary metabolites and phylogenetic study of sponge endosymbiotic bacteria, Bacillus sp. at Agatti Island, Lakshadweep Archipelago.

Authors:  Gopi Mohan; Ajith Kumar Thipparamalai Thangappanpillai; Balagurunathan Ramasamy
Journal:  Biotechnol Rep (Amst)       Date:  2016-06-08

4.  Analysis of the Complete Genome Sequence of Bacillus atrophaeus GQJK17 Reveals Its Biocontrol Characteristics as a Plant Growth-Promoting Rhizobacterium.

Authors:  Jinjin Ma; Chengqiang Wang; Haide Wang; Kai Liu; Tongrui Zhang; Liangtong Yao; Zhou Zhao; Binghai Du; Yanqin Ding
Journal:  Biomed Res Int       Date:  2018-06-26       Impact factor: 3.411
  4 in total

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