Literature DB >> 22843579

Complete genome sequence of the opportunistic food-borne pathogen Cronobacter sakazakii ES15.

Hakdong Shin1, Ju-Hoon Lee, Younho Choi, Sangryeol Ryu.   

Abstract

Cronobacter sakazakii is an emerging pathogen associated with several outbreaks of food-borne illness in premature infants. To characterize its physiology and pathogenicity at the molecular level, C. sakazakii ES15 was isolated and its genome was completely sequenced and analyzed. Here, the results are announced and major findings from its annotation data are reported.

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Year:  2012        PMID： 22843579      PMCID： PMC3416213          DOI： 10.1128/JB.00841-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Divergence of glutamate and glutamine aminoacylation pathways: providing the evolutionary rationale for mischarging.

Authors:  K C Rogers; D Söll
Journal:  J Mol Evol       Date:  1995-05       Impact factor: 2.395

6.  Occurrence of Enterobacter sakazakii in food production environments and households.

Authors:  M Chantal Kandhai; Martine W Reij; Leon G M Gorris; Olivier Guillaume-Gentil; Mike van Schothorst
Journal:  Lancet       Date:  2004-01-03       Impact factor: 79.321

Review 7.  Enterobacter sakazakii: an emerging pathogen in powdered infant formula.

Authors:  D Drudy; N R Mullane; T Quinn; P G Wall; S Fanning
Journal:  Clin Infect Dis       Date:  2006-02-22       Impact factor: 9.079

8.  KEGG for integration and interpretation of large-scale molecular data sets.

Authors:  Minoru Kanehisa; Susumu Goto; Yoko Sato; Miho Furumichi; Mao Tanabe
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

9.  The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1.

Authors:  Carol Iversen; Angelika Lehner; Niall Mullane; Eva Bidlas; Ilse Cleenwerck; John Marugg; Séamus Fanning; Roger Stephan; Han Joosten
Journal:  BMC Evol Biol       Date:  2007-04-17       Impact factor: 3.260

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
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  4 in total

Review 1.  Insights into virulence factors determining the pathogenicity of Cronobacter sakazakii.

Authors:  Niharika Singh; Gunjan Goel; Mamta Raghav
Journal:  Virulence       Date:  2015-05-07       Impact factor: 5.882

Review 2.  Strategies for the identification and tracking of cronobacter species: an opportunistic pathogen of concern to neonatal health.

Authors:  Qiongqiong Yan; Séamus Fanning
Journal:  Front Pediatr       Date:  2015-05-05       Impact factor: 3.418

3.  Complete genome sequence and phenotype microarray analysis of Cronobacter sakazakii SP291: a persistent isolate cultured from a powdered infant formula production facility.

Authors:  Qiongqiong Yan; Karen A Power; Shane Cooney; Edward Fox; Gopal R Gopinath; Christopher J Grim; Ben D Tall; Matthew P McCusker; Séamus Fanning
Journal:  Front Microbiol       Date:  2013-09-02       Impact factor: 5.640

4.  Genomic characterization of an emerging Enterobacteriaceae species: the first case of co-infection with a typical pathogen in a human patient.

Authors:  Zhao Zhang; Daixi Li; Xing Shi; Yao Zhai; Yatao Guo; Yali Zheng; Lili Zhao; Yukun He; Yusheng Chen; Zhanwei Wang; Jianrong Su; Yu Kang; Zhancheng Gao
Journal:  BMC Genomics       Date:  2020-04-15       Impact factor: 3.969
  4 in total

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