Literature DB >> 22843571

Genome sequence of the polychlorinated-biphenyl degrader Pseudomonas pseudoalcaligenes KF707.

Tania Triscari-Barberi1, Domenico Simone, Francesco Maria Calabrese, Marcella Attimonelli, Kristen R Hahn, Kingsley K Amoako, Raymond J Turner, Stefano Fedi, Davide Zannoni.   

Abstract

Pseudomonas pseudoalcaligenes KF707 is a soil polychlorinated biphenyl (PCB) degrader, able to grow both planktonically and as a biofilm in the presence of various toxic metals and metalloids. Here we report the genome sequence (5,957,359 bp) of P. pseudoalcaligenes KF707, which provides insights into metabolic degradation pathways, flagellar motility, and chemotaxis.

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Year:  2012        PMID： 22843571      PMCID： PMC3416219          DOI： 10.1128/JB.00722-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707.

Authors:  K Taira; J Hirose; S Hayashida; K Furukawa
Journal:  J Biol Chem       Date:  1992-03-05       Impact factor: 5.157

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

4.  Evidence for a tellurite-dependent generation of reactive oxygen species and absence of a tellurite-mediated adaptive response to oxidative stress in cells of Pseudomonas pseudoalcaligenes KF707.

Authors:  Valentina Tremaroli; Stefano Fedi; Davide Zannoni
Journal:  Arch Microbiol       Date:  2006-09-30       Impact factor: 2.552

5.  Tolerance of Pseudomonas pseudoalcaligenes KF707 to metals, polychlorobiphenyls and chlorobenzoates: effects on chemotaxis-, biofilm- and planktonic-grown cells.

Authors:  Valentina Tremaroli; Caterina Vacchi Suzzi; Stefano Fedi; Howard Ceri; Davide Zannoni; Raymond J Turner
Journal:  FEMS Microbiol Ecol       Date:  2010-09-15       Impact factor: 4.194

6.  A computational genomics pipeline for prokaryotic sequencing projects.

Authors:  Andrey O Kislyuk; Lee S Katz; Sonia Agrawal; Matthew S Hagen; Andrew B Conley; Pushkala Jayaraman; Viswateja Nelakuditi; Jay C Humphrey; Scott A Sammons; Dhwani Govil; Raydel D Mair; Kathleen M Tatti; Maria L Tondella; Brian H Harcourt; Leonard W Mayer; I King Jordan
Journal:  Bioinformatics       Date:  2010-06-02       Impact factor: 6.937

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total
  8 in total

1.  Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937).

Authors:  Masaki Shintani; Yoshiyuki Ohtsubo; Kohei Fukuda; Akira Hosoyama; Shoko Ohji; Atsushi Yamazoe; Nobuyuki Fujita; Yuji Nagata; Masataka Tsuda; Takashi Hatta; Kazuhide Kimbara
Journal:  Genome Announc       Date:  2014-01-23

2.  The use of nano-sized acicular material, sliding friction, and antisense DNA oligonucleotides to silence bacterial genes.

Authors:  Yuya Mitsudome; Mamiko Takahama; Jun Hirose; Naoto Yoshida
Journal:  AMB Express       Date:  2014-09-04       Impact factor: 3.298

3.  The Role of cheA Genes in Swarming and Swimming Motility of Pseudomonas pseudoalcaligenes KF707.

Authors:  Stefano Fedi; Tania Triscari Barberi; Maria Rosaria Nappi; Federica Sandri; Sean Booth; Raymond J Turner; Marcella Attimonelli; Martina Cappelletti; Davide Zannoni
Journal:  Microbes Environ       Date:  2016-05-03       Impact factor: 2.912

4.  Biphenyl Modulates the Expression and Function of Respiratory Oxidases in the Polychlorinated-Biphenyls Degrader Pseudomonas pseudoalcaligenes KF707.

Authors:  Federica Sandri; Stefano Fedi; Martina Cappelletti; Francesco M Calabrese; Raymond J Turner; Davide Zannoni
Journal:  Front Microbiol       Date:  2017-06-30       Impact factor: 5.640

5.  Biphenyl/PCB Degrading bph Genes of Ten Bacterial Strains Isolated from Biphenyl-Contaminated Soil in Kitakyushu, Japan: Comparative and Dynamic Features as Integrative Conjugative Elements (ICEs).

Authors:  Jun Hirose; Hidehiko Fujihara; Takahito Watanabe; Nobutada Kimura; Hikaru Suenaga; Taiki Futagami; Masatoshi Goto; Akiko Suyama; Kensuke Furukawa
Journal:  Genes (Basel)       Date:  2019-05-27       Impact factor: 4.096

6.  Metal-Resistance in Bacteria: Why Care?

Authors:  Raymond J Turner; Li-Nan Huang; Carlo Viti; Alessio Mengoni
Journal:  Genes (Basel)       Date:  2020-12-08       Impact factor: 4.096

7.  Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping.

Authors:  Fatma Onmus-Leone; Jun Hang; Robert J Clifford; Yu Yang; Matthew C Riley; Robert A Kuschner; Paige E Waterman; Emil P Lesho
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240

8.  Metabolomics reveals differences of metal toxicity in cultures of Pseudomonas pseudoalcaligenes KF707 grown on different carbon sources.

Authors:  Sean C Booth; Aalim M Weljie; Raymond J Turner
Journal:  Front Microbiol       Date:  2015-08-17       Impact factor: 5.640
  8 in total

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