Literature DB >> 22839706

The aging epigenome: DNA methylation from the cradle to the grave.

Marc Winnefeld, Frank Lyko.   

Abstract

Whole-genome methylation analysis of newborns and centenarians reveals widespread epigenetic alterations, and provides new insight into age-related methylation pattern changes.

Entities:  

Mesh：

Year:  2012        PMID： 22839706      PMCID： PMC3491376          DOI： 10.1186/gb4033

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  10 in total

Review 1.  Functions of DNA methylation: islands, start sites, gene bodies and beyond.

Authors:  Peter A Jones
Journal:  Nat Rev Genet       Date:  2012-05-29       Impact factor: 53.242

2.  Epigenetic differences arise during the lifetime of monozygotic twins.

Authors:  Mario F Fraga; Esteban Ballestar; Maria F Paz; Santiago Ropero; Fernando Setien; Maria L Ballestar; Damia Heine-Suñer; Juan C Cigudosa; Miguel Urioste; Javier Benitez; Manuel Boix-Chornet; Abel Sanchez-Aguilera; Charlotte Ling; Emma Carlsson; Pernille Poulsen; Allan Vaag; Zarko Stephan; Tim D Spector; Yue-Zhong Wu; Christoph Plass; Manel Esteller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-11       Impact factor: 11.205

3.  Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging.

Authors:  Michael T Bocker; Isabelle Hellwig; Achim Breiling; Volker Eckstein; Anthony D Ho; Frank Lyko
Journal:  Blood       Date:  2011-03-22       Impact factor: 22.113

4.  Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

Authors:  Andrew E Teschendorff; Usha Menon; Aleksandra Gentry-Maharaj; Susan J Ramus; Daniel J Weisenberger; Hui Shen; Mihaela Campan; Houtan Noushmehr; Christopher G Bell; A Peter Maxwell; David A Savage; Elisabeth Mueller-Holzner; Christian Marth; Gabrijela Kocjan; Simon A Gayther; Allison Jones; Stephan Beck; Wolfgang Wagner; Peter W Laird; Ian J Jacobs; Martin Widschwendter
Journal:  Genome Res       Date:  2010-03-10       Impact factor: 9.043

5.  Distinct DNA methylomes of newborns and centenarians.

Authors:  Holger Heyn; Ning Li; Humberto J Ferreira; Sebastian Moran; David G Pisano; Antonio Gomez; Javier Diez; Jose V Sanchez-Mut; Fernando Setien; F Javier Carmona; Annibale A Puca; Sergi Sayols; Miguel A Pujana; Jordi Serra-Musach; Isabel Iglesias-Platas; Francesc Formiga; Agustin F Fernandez; Mario F Fraga; Simon C Heath; Alfonso Valencia; Ivo G Gut; Jun Wang; Manel Esteller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

6.  Aging and chronic sun exposure cause distinct epigenetic changes in human skin.

Authors:  Elke Grönniger; Barbara Weber; Oliver Heil; Nils Peters; Franz Stäb; Horst Wenck; Bernhard Korn; Marc Winnefeld; Frank Lyko
Journal:  PLoS Genet       Date:  2010-05-27       Impact factor: 5.917

7.  Comprehensive methylome map of lineage commitment from haematopoietic progenitors.

Authors:  Hong Ji; Lauren I R Ehrlich; Jun Seita; Peter Murakami; Akiko Doi; Paul Lindau; Hwajin Lee; Martin J Aryee; Rafael A Irizarry; Kitai Kim; Derrick J Rossi; Matthew A Inlay; Thomas Serwold; Holger Karsunky; Lena Ho; George Q Daley; Irving L Weissman; Andrew P Feinberg
Journal:  Nature       Date:  2010-08-15       Impact factor: 49.962

Review 8.  Finding the fifth base: genome-wide sequencing of cytosine methylation.

Authors:  Ryan Lister; Joseph R Ecker
Journal:  Genome Res       Date:  2009-03-09       Impact factor: 9.043

9.  Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains.

Authors:  Vardhman K Rakyan; Thomas A Down; Siarhei Maslau; Toby Andrew; Tsun-Po Yang; Huriya Beyan; Pamela Whittaker; Owen T McCann; Sarah Finer; Ana M Valdes; R David Leslie; Panogiotis Deloukas; Timothy D Spector
Journal:  Genome Res       Date:  2010-03-10       Impact factor: 9.043

10.  Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context.

Authors:  Brock C Christensen; E Andres Houseman; Carmen J Marsit; Shichun Zheng; Margaret R Wrensch; Joseph L Wiemels; Heather H Nelson; Margaret R Karagas; James F Padbury; Raphael Bueno; David J Sugarbaker; Ru-Fang Yeh; John K Wiencke; Karl T Kelsey
Journal:  PLoS Genet       Date:  2009-08-14       Impact factor: 5.917
  10 in total
  18 in total

1.  Genome-wide quantification of the effects of DNA methylation on human gene regulation.

Authors:  Amanda J Lea; Christopher M Vockley; Rachel A Johnston; Christina A Del Carpio; Luis B Barreiro; Timothy E Reddy; Jenny Tung
Journal:  Elife       Date:  2018-12-21       Impact factor: 8.140

2.  Unique patterns of trimethylation of histone H3 lysine 4 are prone to changes during aging in Caenorhabditis elegans somatic cells.

Authors:  Mintie Pu; Minghui Wang; Wenke Wang; Satheeja Santhi Velayudhan; Siu Sylvia Lee
Journal:  PLoS Genet       Date:  2018-06-18       Impact factor: 5.917

Review 3.  Analyzing the cancer methylome through targeted bisulfite sequencing.

Authors:  Eun-Joon Lee; Junfeng Luo; James M Wilson; Huidong Shi
Journal:  Cancer Lett       Date:  2012-11-28       Impact factor: 8.679

4.  Targeting specific HATs for neurodegenerative disease treatment: translating basic biology to therapeutic possibilities.

Authors:  Sheila K Pirooznia; Felice Elefant
Journal:  Front Cell Neurosci       Date:  2013-03-28       Impact factor: 5.505

5.  Continuous Aging of the Human DNA Methylome Throughout the Human Lifespan.

Authors:  Asa Johansson; Stefan Enroth; Ulf Gyllensten
Journal:  PLoS One       Date:  2013-06-27       Impact factor: 3.240

6.  Epigenetic estimation of age in humpback whales.

Authors:  Andrea M Polanowski; Jooke Robbins; David Chandler; Simon N Jarman
Journal:  Mol Ecol Resour       Date:  2014-04-07       Impact factor: 7.090

7.  Secondhand smoke in combination with ambient air pollution exposure is associated with increasedx CpG methylation and decreased expression of IFN-γ in T effector cells and Foxp3 in T regulatory cells in children.

Authors:  Arunima Kohli; Marco A Garcia; Rachel L Miller; Christina Maher; Olivier Humblet; S Katharine Hammond; Kari Nadeau
Journal:  Clin Epigenetics       Date:  2012-09-25       Impact factor: 6.551

8.  Characterizing genes with distinct methylation patterns in the context of protein-protein interaction network: application to human brain tissues.

Authors:  Yongsheng Li; Juan Xu; Hong Chen; Zheng Zhao; Shengli Li; Jing Bai; Aiwei Wu; Chunjie Jiang; Yuan Wang; Bin Su; Xia Li
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

9.  An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways.

Authors:  James West; Stephan Beck; Xiangdong Wang; Andrew E Teschendorff
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Differential DNA methylation in umbilical cord blood of infants exposed to low levels of arsenic in utero.

Authors:  Devin C Koestler; Michele Avissar-Whiting; E Andres Houseman; Margaret R Karagas; Carmen J Marsit
Journal:  Environ Health Perspect       Date:  2013-06-11       Impact factor: 9.031
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