Literature DB >> 22830686

Pair diffusion, hydrodynamic interactions, and available volume in dense fluids.

Jeetain Mittal1, Gerhard Hummer.   

Abstract

We calculate the pair diffusion coefficient D(r) as a function of the distance r between two hard sphere particles in a dense monodisperse fluid. The distance-dependent pair diffusion coefficient describes the hydrodynamic interactions between particles in a fluid that are central to theories of polymer and colloid dynamics. We determine D(r) from the propagators (Green's functions) of particle pairs obtained from molecular dynamics simulations. At distances exceeding ~3 molecular diameters, the calculated pair diffusion coefficients are in excellent agreement with predictions from exact macroscopic hydrodynamic theory for large Brownian particles suspended in a solvent bath, as well as the Oseen approximation. However, the asymptotic 1/r distance dependence of D(r) associated with hydrodynamic effects emerges only after the pair distance dynamics has been followed for relatively long times, indicating non-negligible memory effects in the pair diffusion at short times. Deviations of the calculated D(r) from the hydrodynamic models at short distances r reflect the underlying many-body fluid structure, and are found to be correlated to differences in the local available volume. The procedure used here to determine the pair diffusion coefficients can also be used for single-particle diffusion in confinement with spherical symmetry.

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Year:  2012        PMID: 22830686      PMCID: PMC3411593          DOI: 10.1063/1.4732515

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

1.  Hydrodynamic coupling of two brownian spheres to a planar surface.

Authors:  E R Dufresne; T M Squires; M P Brenner; D G Grier
Journal:  Phys Rev Lett       Date:  2000-10-09       Impact factor: 9.161

2.  Pair dynamics in a glass-forming binary mixture: simulations and theory.

Authors:  Rajesh K Murarka; Biman Bagchi
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-04-07

3.  Interplay between hydrodynamics and the free energy surface in the assembly of nanoscale hydrophobes.

Authors:  Joseph A Morrone; Jingyuan Li; B J Berne
Journal:  J Phys Chem B       Date:  2011-12-22       Impact factor: 2.991

4.  Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins.

Authors:  Tamara Frembgen-Kesner; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2009-02-10       Impact factor: 6.006

5.  Using compressibility factor as a predictor of confined hard-sphere fluid dynamics.

Authors:  Jeetain Mittal
Journal:  J Phys Chem B       Date:  2009-10-22       Impact factor: 2.991

6.  Layering and position-dependent diffusive dynamics of confined fluids.

Authors:  Jeetain Mittal; Thomas M Truskett; Jeffrey R Errington; Gerhard Hummer
Journal:  Phys Rev Lett       Date:  2008-04-11       Impact factor: 9.161

7.  Zwanzig-Mori equation for the time-dependent pair distribution function.

Authors:  Song-Ho Chong; Chang-Yun Son; Sangyoub Lee
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-04-26
  7 in total
  3 in total

1.  Diffusive Dynamics of Contact Formation in Disordered Polypeptides.

Authors:  Gül H Zerze; Jeetain Mittal; Robert B Best
Journal:  Phys Rev Lett       Date:  2016-02-11       Impact factor: 9.161

2.  Pathways to dewetting in hydrophobic confinement.

Authors:  Richard C Remsing; Erte Xi; Srivathsan Vembanur; Sumit Sharma; Pablo G Debenedetti; Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

3.  Position-Dependent Diffusion Tensors in Anisotropic Media from Simulation: Oxygen Transport in and through Membranes.

Authors:  An Ghysels; Richard M Venable; Richard W Pastor; Gerhard Hummer
Journal:  J Chem Theory Comput       Date:  2017-05-19       Impact factor: 6.006

  3 in total

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