Literature DB >> 22823204

Advances in computational methods to predict the biological activity of compounds.

Chanin Nantasenamat1, Chartchalerm Isarankura-Na-Ayudhya, Virapong Prachayasittikul.   

Abstract

IMPORTANCE OF THE FIELD: The past decade had witnessed remarkable advances in computer science which had given rise to many new possibilities including the ability to simulate and model life's phenomena. Among one of the greatest gifts computer science had contributed to drug discovery is the ability to predict the biological activity of compounds and in doing so drives new prospects and possibilities for the development of novel drugs with robust properties. AREAS COVERED IN THIS REVIEW: This review presents an overview of the advances in the computational methods utilized for predicting the biological activity of compounds. WHAT THE READER WILL GAIN: The reader will gain a conceptual view of the quantitative structure-activity relationship paradigm and the methodological overview of commonly used machine learning algorithms. TAKE HOME MESSAGE: Great advancements in computational methods have now made it possible to model the biological activity of compounds in an accurate manner. To obtain such a feat, it is often necessary to forgo several data pre-processing and post-processing procedures. A wide range of tools are available to perform such tasks; however, the proper selection and piecing together of complementary components in the prediction workflow remains a challenging and highly subjective task that heavily relies on the experience and judgment of the practitioner.

Entities:  

Year:  2010        PMID: 22823204     DOI: 10.1517/17460441.2010.492827

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  36 in total

1.  PyBact: an algorithm for bacterial identification.

Authors:  Chanin Nantasenamat; Likit Preeyanon; Chartchalerm Isarankura-Na-Ayudhya; Virapong Prachayasittikul
Journal:  EXCLI J       Date:  2011-11-24       Impact factor: 4.068

2.  Proteochemometric model for predicting the inhibition of penicillin-binding proteins.

Authors:  Sunanta Nabu; Chanin Nantasenamat; Wiwat Owasirikul; Ratana Lawung; Chartchalerm Isarankura-Na-Ayudhya; Maris Lapins; Jarl E S Wikberg; Virapong Prachayasittikul
Journal:  J Comput Aided Mol Des       Date:  2014-10-26       Impact factor: 3.686

3.  Mechanism of action involved in the anxiolytic-like effects of Hibalactone isolated from Hydrocotyle umbellata L.

Authors:  Matheus Gabriel de Oliveira; Lorrane Kelle da Silva Moreira; Larissa Cordova Turones; Dionys de Souza Almeida; Aline Nazareth Martins; Thiago Levi Silva Oliveira; Vinicius Barreto da Silva; Leonardo Luiz Borges; Elson Alves Costa; José Realino de Paula
Journal:  J Tradit Complement Med       Date:  2021-09-11

4.  A new perspective on the modeling and topological characterization of H-Naphtalenic nanosheets with applications.

Authors:  Asad Ullah; Aurang Zeb; Shahid Zaman
Journal:  J Mol Model       Date:  2022-07-05       Impact factor: 2.172

5.  Accurate prediction of personalized olfactory perception from large-scale chemoinformatic features.

Authors:  Hongyang Li; Bharat Panwar; Gilbert S Omenn; Yuanfang Guan
Journal:  Gigascience       Date:  2018-02-01       Impact factor: 6.524

6.  Predicting binding poses and affinity ranking in D3R Grand Challenge using PL-PatchSurfer2.0.

Authors:  Woong-Hee Shin; Daisuke Kihara
Journal:  J Comput Aided Mol Des       Date:  2019-09-10       Impact factor: 3.686

7.  Effect of N-(2-aminoethyl) ethanolamine on hypertrophic scarring changes in vitro: Finding novel anti-fibrotic therapies.

Authors:  Zhenping Chen; Jianhua Gu; Amina El Ayadi; Andres F Oberhauser; Jia Zhou; Linda E Sousse; Celeste C Finnerty; David N Herndon; Paul J Boor
Journal:  Toxicol Appl Pharmacol       Date:  2018-09-22       Impact factor: 4.219

8.  Large-scale structure-activity relationship study of hepatitis C virus NS5B polymerase inhibition using SMILES-based descriptors.

Authors:  Apilak Worachartcheewan; Virapong Prachayasittikul; Alla P Toropova; Andrey A Toropov; Chanin Nantasenamat
Journal:  Mol Divers       Date:  2015-11       Impact factor: 2.943

9.  Navigating the chemical space of dipeptidyl peptidase-4 inhibitors.

Authors:  Watshara Shoombuatong; Veda Prachayasittikul; Nuttapat Anuwongcharoen; Napat Songtawee; Teerawat Monnor; Supaluk Prachayasittikul; Virapong Prachayasittikul; Chanin Nantasenamat
Journal:  Drug Des Devel Ther       Date:  2015-08-10       Impact factor: 4.162

10.  Probing the origins of aromatase inhibitory activity of disubstituted coumarins via QSAR and molecular docking.

Authors:  Apilak Worachartcheewan; Naravut Suvannang; Supaluk Prachayasittikul; Virapong Prachayasittikul; Chanin Nantasenamat
Journal:  EXCLI J       Date:  2014-12-08       Impact factor: 4.068

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